DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycE and Ccnb1

DIOPT Version :9

Sequence 1:NP_001246037.1 Gene:CycE / 34924 FlyBaseID:FBgn0010382 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_741988.1 Gene:Ccnb1 / 25203 RGDID:2291 Length:423 Species:Rattus norvegicus


Alignment Length:486 Identity:108/486 - (22%)
Similarity:171/486 - (35%) Gaps:179/486 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 SSASQRSEEELPGTSAASRTDEMCSCDSQNLAASTAATSNGNKRKRRLSSDSNEDPELGFEPPSA 133
            :..|....:.:|...|||:         ..|.:.||....|||                     .
  Rat    17 AKVSMAGAKRVPVAVAASK---------PLLRSRTALGDIGNK---------------------V 51

  Fly   134 KRQQRLPALYGSEQGNLSSVASSVYTSPVVSVDGQSTQELLSIRSSPAEDLSEAPHSPLPDSPDS 198
            ..|.|:|....:::....:|.......||..|  ...:..:.:.....|.:.|..|||.|...|:
  Rat    52 SEQSRIPLKKETKKLGSGTVTVKALPKPVDKV--PVCEPEVELDEPEPEPVMEVKHSPEPILVDT 114

  Fly   199 P-PSPDRGSKQTPVVVRYAAEQVVTSTVVTQKTEDDDLLDDSCEDYSYDEDDEDDVEEEDDDVEI 262
            | |||...|...|      ||:.:                  |:.:|              ||.:
  Rat   115 PSPSPMETSGCAP------AEEYL------------------CQAFS--------------DVIL 141

  Fly   263 YSSTISPASSG----CSQQQAVNGERTPGLPKHQEQIHHPVSDLMINMRTPMSPAVENGLRQCPL 323
            ..|.:.....|    ||:.                     |.|:...:|                
  Rat   142 AVSDVDADDGGDPNLCSEY---------------------VKDIYAYLR---------------- 169

  Fly   324 PALAWANAADVWRLMCHRDEQDSRLRSISMLEQHPGLQPR----------MRAILLDWLIEVCEV 378
                                         .||:...::|:          |||||:||||:|...
  Rat   170 -----------------------------QLEEEQSVRPKYLLGREVTGNMRAILIDWLIQVQMK 205

  Fly   379 YKLHRETFYLAVDYLDRYLHVAHKVQKTHLQLIGITCLFVAAKVEEIYPPKIGEFAYVTDGACTE 443
            ::|.:||.|:.|..:||::..: .|.|..|||:|:|.:|:|:|.||:|||:||:||:||:...|:
  Rat   206 FRLLQETMYMTVSIIDRFMQDS-CVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTNNTYTK 269

  Fly   444 RDILNHEKILLQALDWDISPITITGWLGVYMQLNVNNRTPASFSQIGRQKSAEADDAFIYPQFSG 508
            ..|...|..:|:.|::.         ||..:.|:...|.    |:||     |.|..        
  Rat   270 HQIRQMEMKILRVLNFS---------LGRPLPLHFLRRA----SKIG-----EVDVE-------- 308

  Fly   509 FEFVQTSQLLDLCTLDVGMANYSYSVLAAAA 539
             :......|::|..||..|.:::.|.:||.|
  Rat   309 -QHTLAKYLMELSMLDYDMVHFAPSQIAAGA 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycENP_001246037.1 Cyclin_N 333..462 CDD:278560 46/138 (33%)
Cyclin_C <517..>571 CDD:281044 9/23 (39%)
Ccnb1NP_741988.1 Interaction with CDK2. /evidence=ECO:0000250 159..167 2/28 (7%)
Cyclin_N 163..288 CDD:278560 48/179 (27%)
Interaction with CDK2. /evidence=ECO:0000250 248..251 1/2 (50%)
Cyclin_C 290..408 CDD:281044 16/67 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340016
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D993640at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.850

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