DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycE and cyd-1

DIOPT Version :10

Sequence 1:NP_001246037.1 Gene:CycE / 34924 FlyBaseID:FBgn0010382 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_001369816.1 Gene:cyd-1 / 174941 WormBaseID:WBGene00000870 Length:405 Species:Caenorhabditis elegans


Alignment Length:429 Identity:85/429 - (19%)
Similarity:150/429 - (34%) Gaps:158/429 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 CPL-PALAWANAADVWRLMCHRDEQDSRL--RSI-SMLEQHPGLQPRM--------------RAI 367
            |.| |:.:.|...:|..|:.:|.:...:|  |:. :.:|....|||..              |..
 Worm    43 CQLHPSRSAALNDNVRTLIYNRTDPHIQLDMRAFYNCMEYEEALQPNYHYFTGVQENITPFHREQ 107

  Fly   368 LLDWLIEVCEVYKLHRETFYLAVDYLDRYLHVAHKVQKTHLQLIGITCLFVAAKVEEIYPPKIGE 432
            .:||:.:|.:......:.|.|||..:||::.| ..:.|..:|:|....||:|:|::..:|....:
 Worm   108 AIDWIYDVAKEENCDGDVFLLAVSLIDRFMSV-QNILKHDIQMIAGVALFIASKLKAPHPMTASK 171

  Fly   433 FAYVTDGACTERDILNHEKILLQALDWDISPITITGWLGVYMQLNVNNRTPASFSQIGRQKSAEA 497
            .||.:|.:|....||..|.:::..|.|:                   ..:|.:            
 Worm   172 IAYYSDNSCPIDMILQWELLIVTTLQWE-------------------TESPTA------------ 205

  Fly   498 DDAFIYPQFSGFEFVQTSQLLDLCTLDVGMANYSYSVLAAAAISHTFSREMALRCSGLDWQ-VIQ 561
                    ||.|:|:.                               ||...:.....|:| |:|
 Worm   206 --------FSFFDFLA-------------------------------SRIPQIHNMRGDFQTVVQ 231

  Fly   562 PCARWMEPFFRVISQKAPYLQ----------LNEQNEQ--------VSNKFGLGLICPNIVTDDS 608
            .|.:     ...::...|.:|          |..||::        ::|.|.|.:   |::  ||
 Worm   232 KCQK-----MHKLATLFPSMQCAIGLYYVSNLPTQNKELAVKIKDLLANMFQLEV---NLL--DS 286

  Fly   609 HI--IQTHTTTMDMYDEVLMAQDAAHAMRARIQASPA--TALRAPES------------------ 651
            :|  :|...:|..:|    .::||     .:.:.:|:  .:.:.||:                  
 Worm   287 YIPMVQRCMSTTPIY----TSEDA-----EKTEPTPSAPASTQEPEAFQELKELKEEPLPTPPPE 342

  Fly   652 --------LLTP-PASSHKPDEYLGDEGDETGARSGISS 681
                    ||.| |.|...|...|.|.|..:...|..||
 Worm   343 EPAFQKLVLLEPIPLSEQTPSTPLNDSGFSSDVSSPASS 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycENP_001246037.1 CYCLIN_CCNE_rpt1 327..459 CDD:410223 37/148 (25%)
CYCLIN_CCNE_rpt2 463..576 CDD:410224 12/113 (11%)
cyd-1NP_001369816.1 CYCLIN_CCND_rpt1 41..199 CDD:410219 40/156 (26%)

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