DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18477 and psh

DIOPT Version :10

Sequence 1:NP_609763.1 Gene:CG18477 / 34922 FlyBaseID:FBgn0028864 Length:464 Species:Drosophila melanogaster
Sequence 2:NP_573297.1 Gene:psh / 32832 FlyBaseID:FBgn0030926 Length:394 Species:Drosophila melanogaster


Alignment Length:227 Identity:59/227 - (25%)
Similarity:101/227 - (44%) Gaps:22/227 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 SSYVAGGALIAPHVVITARQRTENMTASQLVVRAGEWDFSTKTEQLPSVDVPIRSIVRHPGFNLE 194
            :.:..||:|||...|:||.........:...||.|..:.........  |:.|||:..||.: :.
  Fly   168 TDFRCGGSLIASRFVLTAAHCVNTDANTPAFVRLGAVNIENPDHSYQ--DIVIRSVKIHPQY-VG 229

  Fly   195 NGANNVALVFLRRSLTSSRHINPICM----PSAPKNFDFSRCIFTGWGKNSFDDPSYMNVLKKIS 255
            |..|::|::.|.|.:..:.:|.|.|:    ...|.|   |:....|||..:....:...:|.:..
  Fly   230 NKYNDIAILELERDVVETDNIRPACLHTDATDPPSN---SKFFVAGWGVLNVTTRARSKILLRAG 291

  Fly   256 LPVVQRRTC-----EQ--QLRLYYGNDFELDNSLMCAGGEP-GKDSCEGDGGSPLACAIKDNPQR 312
            |.:|....|     ||  .:||....   :.:||:||..:. ..|:|:||.|.||...:......
  Fly   292 LELVPLDQCNISYAEQPGSIRLLKQG---VIDSLLCAIDQKLIADACKGDSGGPLIHELNVEDGM 353

  Fly   313 YELAGIVNFGVDCGLPGVPAVYTNVANVIEWI 344
            |.:.|:::.|..|... .|.:||.|::.:::|
  Fly   354 YTIMGVISSGFGCATV-TPGLYTRVSSYLDFI 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18477NP_609763.1 Tryp_SPc 113..344 CDD:214473 58/225 (26%)
pshNP_573297.1 CLIP 30..79 CDD:197829
Tryp_SPc 144..387 CDD:238113 59/227 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.