DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18480 and zgc:153913

DIOPT Version :9

Sequence 1:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001073448.1 Gene:zgc:153913 / 559700 ZFINID:ZDB-GENE-061103-397 Length:496 Species:Danio rerio


Alignment Length:260 Identity:69/260 - (26%)
Similarity:105/260 - (40%) Gaps:71/260 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ILLYVGLLLCVLLQVCRSKTQSQMFCPTVCHCDLHAQRNRAVCSAKRLISANIEIPTTVELLDLS 82
            |.||.|        ||         ||..|.|   ...::.|||..|:.|..:.|.|.|..|.:.
Zfish    13 IHLYCG--------VC---------CPEPCQC---FSGSKLVCSDDRMKSLPVNISTQVRELIVV 57

  Fly    83 YNDITTIDDDSFKTTIHLLNLTLAHNAIHTLYGDAFVELTRLRYLDLS----------------- 130
            .:.|..:|..||..|:.|..|...:..:.::.|:||..|..||.|::|                 
Zfish    58 ASGIPDLDQQSFPETLRLSKLVFLNGMLKSVSGEAFERLVELRELEISGNICWMSLDIQTFSSLT 122

  Fly   131 --------YNRLEQIDEHILESNNQLIHLNLEGNKLSTLGKGPILRSPSLRSLNLRNSQVNQLGT 187
                    .|:|..:|..:..|.:||..|.|.||.||.|......|...|:.|:|..:|::.|.|
Zfish   123 NLTRLLLNNNKLSGVDAGLFHSLHQLEMLQLRGNGLSFLSGRLFQRLHRLQELDLSFNQISSLST 187

  Fly   188 QL------------------------LSALPQLRQLDLAQNLLLTLSPGDFHAPRNLASLNVEEN 228
            :|                        .:.|..|::|:|..||:..|:||.|  |.:|.:|.:::|
Zfish   188 ELFQNNSELRVLSLQANKIPNLPDGIFTHLDHLQELNLRSNLIRVLTPGSF--PASLKTLILKKN 250

  Fly   229  228
            Zfish   251  250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 19/84 (23%)
LRR_RI <76..230 CDD:238064 52/202 (26%)
leucine-rich repeat 76..99 CDD:275380 7/22 (32%)
leucine-rich repeat 100..123 CDD:275380 6/22 (27%)
LRR_8 122..182 CDD:290566 21/84 (25%)
leucine-rich repeat 124..147 CDD:275380 8/47 (17%)
leucine-rich repeat 148..171 CDD:275380 9/22 (41%)
LRR_8 170..230 CDD:290566 21/83 (25%)
leucine-rich repeat 172..195 CDD:275380 8/46 (17%)
leucine-rich repeat 196..219 CDD:275380 10/22 (45%)
zgc:153913NP_001073448.1 leucine-rich repeat 75..98 CDD:275380 6/22 (27%)
LRR_RI 141..>350 CDD:238064 32/112 (29%)
LRR_8 147..206 CDD:290566 17/58 (29%)
leucine-rich repeat 148..171 CDD:275380 9/22 (41%)
leucine-rich repeat 172..195 CDD:275380 7/22 (32%)
LRR_8 194..252 CDD:290566 14/59 (24%)
leucine-rich repeat 196..219 CDD:275380 1/22 (5%)
leucine-rich repeat 220..241 CDD:275380 10/22 (45%)
leucine-rich repeat 242..265 CDD:275380 3/9 (33%)
leucine-rich repeat 266..289 CDD:275380
LRR_8 267..324 CDD:290566
leucine-rich repeat 290..313 CDD:275380
leucine-rich repeat 314..337 CDD:275380
leucine-rich repeat 338..359 CDD:275380
TPKR_C2 370..>404 CDD:301599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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