DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18480 and vasna

DIOPT Version :10

Sequence 1:NP_609761.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001313614.1 Gene:vasna / 553185 ZFINID:ZDB-GENE-050522-43 Length:688 Species:Danio rerio


Alignment Length:619 Identity:139/619 - (22%)
Similarity:198/619 - (31%) Gaps:228/619 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LLLCVLLQVCRSKTQSQMFCPTVCHCDLHAQRNRAVCSAKRLISANIEIPTT------------- 75
            |:|..||..|.|..     ||..|.|   ...|...|..:.||.....:|:|             
Zfish    10 LILLQLLCGCLSSR-----CPHDCTC---LPNNNIFCVQRNLIYMPRGLPSTGKQLYVFQNKINI 66

  Fly    76 -----------VELLDLSYNDITTIDDDSFKTTIHLLNLTLAHNAIHTLYGDAFVELTRLRYLDL 129
                       :|:||||.|.::.|.|..|.....|.||.|:.|.|..:..|:|:.|..|..|.|
Zfish    67 LQQQDFVELGELEMLDLSQNSLSEIPDGVFSPLSSLHNLDLSSNYITHISKDSFIGLVNLERLYL 131

  Fly   130 SYNRLEQIDEHILESNNQLIHLNLEGNKLSTL----------------GKGPI----LRSPSLRS 174
            ..|.::.|.....|....|:.|.|:||::|.|                ...|:    |::|.|.|
Zfish   132 YSNIIQNIHPAAFEGLENLLELKLQGNQISVLPALQLPRLLHLDLSYNSIPPLVAQDLQTPHLES 196

  Fly   175 LNLRNSQVNQLGTQLLSALPQLRQLDLAQNLLLTLSP---------------------------- 211
            |.:....:..|..:||.:|..|..||::||.|:.:.|                            
Zfish   197 LKIAGLGLTSLDEELLGSLVNLHVLDVSQNQLVDIQPTLKSMGGLRNLNLTGNPLGSLKHEDFQN 261

  Fly   212 -------------------GDFHAPRNLASLNVEENPFNCDRALAKVATGLRQRGVAIFMSNCME 257
                               |.|:....|..|...||||||...||.....|:...|.:..:    
Zfish   262 LVNLLELDLSNLNLQGFPEGFFNLFPKLEKLTAAENPFNCLCPLAWFPAWLKDVRVELLRT---- 322

  Fly   258 EEVQDHQDDAEAVNFPNKN-----EKFESMEY------LEPSTRGPQSVLSVWR----------- 300
            ||.:.|        ||..|     ||.|..::      :|.::.|..|..|..:           
Zfish   323 EETRCH--------FPPINSGKVLEKLEHKDFGCPTTTIELTSAGTSSTTSKPKNSSTQLGTTHI 379

  Fly   301 -------DLDSSEEQNSS--QDDEQMSSLSDVCEGSREKLCLRYRICLERVSHELLAGGNSQLED 356
                   |:.|::..|..  |.....|.:.:..||  |.:.....|||.        ||.     
Zfish   380 VPPAPPSDISSADADNFPVYQTTAFPSRIMEDSEG--EGIMCPPNICLN--------GGT----- 429

  Fly   357 EIIRTHTYDEDDLKLAFVVGGATGVCMVIFIITFALCLKSC----CEMRKKKSNPEVATGVSAPL 417
                          ..|...|.. ||         ||..|.    ||::.:...|        |.
Zfish   430 --------------CIFKSNGVI-VC---------LCPPSMSGNYCEIQNEAMLP--------PP 462

  Fly   418 NPSQDSLPTIHTWSPQRTRNPRRSNPQRPRSTQSHAVVRQPYGPQDNFVSRLFGRPARSQYYRTI 482
            :| :.||.||.|              .:|.:..||.:.               ........:|.|
Zfish   463 SP-RVSLETIAT--------------VQPNTISSHHIT---------------STSISLDLHRYI 497

  Fly   483 NQNTATLIR--RLSRSNLFTSRDREPSSPAEPPT 514
              .|...||  ||:.||| :..||.|...:.||:
Zfish   498 --QTRPHIRGIRLTYSNL-SGPDRRPLQLSVPPS 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_609761.1 LRR <66..>230 CDD:443914 57/254 (22%)
leucine-rich repeat 76..99 CDD:275380 9/22 (41%)
leucine-rich repeat 100..123 CDD:275380 9/22 (41%)
leucine-rich repeat 124..147 CDD:275380 6/22 (27%)
leucine-rich repeat 148..171 CDD:275380 9/42 (21%)
leucine-rich repeat 172..195 CDD:275380 7/22 (32%)
leucine-rich repeat 196..219 CDD:275380 9/69 (13%)
vasnaNP_001313614.1 leucine-rich repeat 53..77 CDD:275380 1/23 (4%)
LRR <63..>277 CDD:443914 48/213 (23%)
leucine-rich repeat 78..101 CDD:275380 9/22 (41%)
leucine-rich repeat 102..125 CDD:275380 9/22 (41%)
leucine-rich repeat 126..149 CDD:275380 6/22 (27%)
leucine-rich repeat 150..170 CDD:275380 7/19 (37%)
leucine-rich repeat 171..193 CDD:275380 2/21 (10%)
leucine-rich repeat 194..217 CDD:275380 7/22 (32%)
leucine-rich repeat 218..240 CDD:275380 7/21 (33%)
leucine-rich repeat 241..264 CDD:275380 0/22 (0%)
leucine-rich repeat 265..288 CDD:275380 2/22 (9%)
PCC 269..>464 CDD:188093 51/253 (20%)
fn3 475..546 CDD:394996 18/72 (25%)

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