DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18480 and vasn

DIOPT Version :9

Sequence 1:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001005036.1 Gene:vasn / 448556 XenbaseID:XB-GENE-941552 Length:661 Species:Xenopus tropicalis


Alignment Length:393 Identity:93/393 - (23%)
Similarity:145/393 - (36%) Gaps:142/393 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MWLGLKQILLYVGLLLCVLLQVCRSKTQSQMF---CPTVCHCDLHAQRNRAVCSAKRLISANIEI 72
            ||    .:|:::.||          .|..||.   ||..|.|:   ......|.|::    |...
 Frog     1 MW----HLLVWIILL----------ATAQQMITEGCPAGCQCN---TPQTVFCLARK----NSNF 44

  Fly    73 PTTV----------------------------ELLDLSYNDITTIDDDSFKTTIHLLNLTLAHNA 109
            |.:|                            .|||||:|.::::....|:...:|.||.|..|.
 Frog    45 PRSVPPDTLNLYVFENGISSIEESSFIGLNGLHLLDLSHNQLSSLPGGVFRNLANLSNLDLTSNQ 109

  Fly   110 IHTLYGDAFVELTRLRYLDLSYNRLEQID-------EHILE---SNNQLI--------HL----- 151
            :..:..|.|..|:||..|.|:.||:..|.       |.:||   |||||:        ||     
 Frog   110 LTEISADTFQGLSRLERLYLNGNRIRSIHPEAFKGIESLLELKLSNNQLVTPPAFSLPHLLLLDL 174

  Fly   152 ----------------NLEGNKLSTLGKGPILRS-----PSLRSLNLRNSQV------------- 182
                            |:|..:|:.||...:...     .:|..|:|.::|:             
 Frog   175 SYNAIPVIQQGVFNAGNIESLRLAGLGLKEVPEELLSGLKNLHELDLSDNQLDKVPPGLHGLTKL 239

  Fly   183 --------NQLGTQLLSALPQLRQLDLAQNLLLTLSPGDFHAPRNLASLNVEENPFNCDRALAKV 239
                    :|:....||.||.|::|||:...|.||..|.|.:.:.|.::::.:|||||..:|..:
 Frog   240 NIAGNVGFSQIQVDDLSNLPALQELDLSGLSLQTLPKGLFRSSKRLRAVSLAQNPFNCVCSLGWL 304

  Fly   240 ATGLRQRGVAIFMSNCMEEEVQDHQDDAEAVNFPNKN-----EKFESMEY--------LEPSTRG 291
            :..:|..||.:.            :.|....:||.||     .:....||        ..|||..
 Frog   305 SEWMRVSGVVLL------------RPDETRCHFPPKNAGKTLRQLRDSEYGCPAPTTIQMPSTMP 357

  Fly   292 PQS 294
            |.:
 Frog   358 PST 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 21/87 (24%)
LRR_RI <76..230 CDD:238064 58/246 (24%)
leucine-rich repeat 76..99 CDD:275380 8/50 (16%)
leucine-rich repeat 100..123 CDD:275380 8/22 (36%)
LRR_8 122..182 CDD:290566 25/103 (24%)
leucine-rich repeat 124..147 CDD:275380 11/32 (34%)
leucine-rich repeat 148..171 CDD:275380 8/56 (14%)
LRR_8 170..230 CDD:290566 20/80 (25%)
leucine-rich repeat 172..195 CDD:275380 8/43 (19%)
leucine-rich repeat 196..219 CDD:275380 9/22 (41%)
vasnNP_001005036.1 LRRNT 21..52 CDD:214470 9/37 (24%)
leucine-rich repeat 52..75 CDD:275380 0/22 (0%)
LRR 1 52..72 0/19 (0%)
LRR <60..>276 CDD:227223 53/215 (25%)
LRR 2 75..96 7/20 (35%)
leucine-rich repeat 76..99 CDD:275380 7/22 (32%)
LRR_8 99..158 CDD:338972 21/58 (36%)
LRR 3 99..120 7/20 (35%)
leucine-rich repeat 100..123 CDD:275380 8/22 (36%)
LRR 4 123..144 7/20 (35%)
leucine-rich repeat 124..147 CDD:275380 6/22 (27%)
LRR 5 147..168 7/20 (35%)
leucine-rich repeat 148..169 CDD:275380 7/20 (35%)
LRR 6 169..189 1/19 (5%)
leucine-rich repeat 170..191 CDD:275380 0/20 (0%)
LRR 7 191..212 5/20 (25%)
leucine-rich repeat 192..215 CDD:275380 4/22 (18%)
LRR 8 215..237 4/21 (19%)
leucine-rich repeat 216..235 CDD:275380 4/18 (22%)
leucine-rich repeat 236..260 CDD:275380 4/23 (17%)
LRR 9 238..258 3/19 (16%)
LRR 10 259..281 10/21 (48%)
leucine-rich repeat 261..281 CDD:275380 9/19 (47%)
PCC 265..>344 CDD:188093 24/90 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 348..395 4/13 (31%)
EGF 407..438 CDD:333761
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 591..661
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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