DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18480 and caps

DIOPT Version :9

Sequence 1:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster


Alignment Length:295 Identity:74/295 - (25%)
Similarity:110/295 - (37%) Gaps:77/295 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LCVLLQVCRSKTQSQMF-----CPTVCHCD-------------------LHAQRNRAVCSAKRL- 65
            ||:.|.:|.......:.     ||..|.||                   |:....|.|....:| 
  Fly    21 LCLCLCLCLVLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLK 85

  Fly    66 -ISANIEIPTTVELLDLSYNDITTIDDDSFKTTIHLLNLTLAHN----------------AIHTL 113
             |.::::....:..||||:||:.||.:.||.....|..|.|.||                ::..|
  Fly    86 TIDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNL 150

  Fly   114 YGDAFVEL--------TRLRYLDLSYNRLEQIDEHILESNNQLIHLNLEGNKLST---------- 160
            .|:...||        .:|..|:|..||:..||.|.|:..:.|..|.|:.|.|:|          
  Fly   151 RGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQAL 215

  Fly   161 -------LGKGPILRSP--------SLRSLNLRNSQVNQLGTQLLSALPQLRQLDLAQNLLLTLS 210
                   ||....:..|        .|..|:||.:.::.:....|..|..||.|||:.|.|..:.
  Fly   216 HSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIP 280

  Fly   211 PGDFHAPRNLASLNVEENPFNCDRALAKVATGLRQ 245
            ...|.....|..||:.:|.|....:.|  .:|||:
  Fly   281 TAAFQRLGRLEQLNIGQNDFEVISSGA--FSGLRE 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 23/83 (28%)
LRR_RI <76..230 CDD:238064 55/202 (27%)
leucine-rich repeat 76..99 CDD:275380 10/22 (45%)
leucine-rich repeat 100..123 CDD:275380 9/46 (20%)
LRR_8 122..182 CDD:290566 22/84 (26%)
leucine-rich repeat 124..147 CDD:275380 9/22 (41%)
leucine-rich repeat 148..171 CDD:275380 9/47 (19%)
LRR_8 170..230 CDD:290566 19/67 (28%)
leucine-rich repeat 172..195 CDD:275380 6/22 (27%)
leucine-rich repeat 196..219 CDD:275380 8/22 (36%)
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 4/20 (20%)
LRR_8 96..155 CDD:290566 17/58 (29%)
leucine-rich repeat 97..120 CDD:275380 10/22 (45%)
leucine-rich repeat 121..144 CDD:275380 5/22 (23%)
LRR_8 143..201 CDD:290566 16/57 (28%)
leucine-rich repeat 145..168 CDD:275380 4/22 (18%)
LRR_RI 147..397 CDD:238064 45/169 (27%)
leucine-rich repeat 169..192 CDD:275380 9/22 (41%)
leucine-rich repeat 193..217 CDD:275380 6/23 (26%)
LRR_8 217..276 CDD:290566 15/58 (26%)
leucine-rich repeat 218..241 CDD:275380 3/22 (14%)
leucine-rich repeat 242..265 CDD:275380 6/22 (27%)
LRR_8 265..321 CDD:290566 17/51 (33%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..313 CDD:275380 8/24 (33%)
LRR_8 312..374 CDD:290566 1/2 (50%)
leucine-rich repeat 314..335 CDD:275380 74/295 (25%)
leucine-rich repeat 339..363 CDD:275380
LRRCT 395..445 CDD:214507
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453543
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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