DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18480 and Lrt

DIOPT Version :10

Sequence 1:NP_609761.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster


Alignment Length:517 Identity:125/517 - (24%)
Similarity:184/517 - (35%) Gaps:138/517 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 QVCRSKTQSQMFCPTVCHCDLHAQRNRAVCSAKRLISANIEIPTTVELLDLSYNDITTIDDDSFK 95
            |..||.:|    |.::...||.|.......|.:.|....     .:|.|:|:.|.|.:|.:.:..
  Fly   312 QSLRSLSQ----CLSLRQLDLQANNLNGPLSEQTLPGMR-----NLESLNLNRNLIKSIQNKALA 367

  Fly    96 TTIHLLNLTLAHNAIHTLYGDAFVELTRLRYLDLSYNRLEQIDEHILESNNQLIHLNLEGNKLST 160
            ....|::|:|.||.|..|...||..|..|..||||||.:..|      |:..|.||:        
  Fly   368 NFSRLVSLSLRHNQIDVLQDHAFFGLGALDSLDLSYNGIVAI------SSASLQHLS-------- 418

  Fly   161 LGKGPILRSPSLRSLNLRNSQVNQLGTQLLSALPQLRQLDLAQNLLLTLSPGDFHAPRNLASLNV 225
                      .|..|:|.::.:..|.:.|::.||.||:|.||.|.:..::.......|.|.||.:
  Fly   419 ----------RLTVLDLTHNFLRALTSDLIAPLPSLRELRLAGNDISIVARNAMDGARELESLQM 473

  Fly   226 EENPFNCDRALAKVATGLRQRGVAIFMSNCMEEEVQDHQD-DAEAVNFPNKNEKFESMEYLE--P 287
            :|||.:||.::...|..|              :|.|.|.. .|..|..|.          ||  |
  Fly   474 QENPLSCDCSIRPFAEWL--------------QESQLHSSLSASCVTPPR----------LEGAP 514

  Fly   288 STRGPQSVLSVWRDLDSSEEQNSS--------QDDEQMSSLSDVCEGSREKLCLRYRICLERVSH 344
            ..:.|...||.  |:|:.|:.|::        ....|.|.:.|:.|              |.:.|
  Fly   515 LLQVPVETLSC--DMDNVEKDNANIMQHLETLAKPNQTSPIKDLSE--------------EIILH 563

  Fly   345 ELLAGGNSQLEDEIIRTHTYDEDDLKLAFVVGGATG--VCMVIFI-----ITFALCLKSCCEMRK 402
            ||               |...:..|.|.:::..:..  :|..||:     |...|...|......
  Fly   564 EL---------------HFSTDYGLILTWLLNLSKKDYMCDAIFVYKEEHINEILIDNSPIHCES 613

  Fly   403 KKSNPEVATGVSAPLNPSQD-------SLPTIHTWSPQRTRNPRRSNPQRPRSTQSHAV------ 454
            |..|.:....|..|.:.|.:       .|..|....|....|...||..|...:...||      
  Fly   614 KVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNIGCSNITRLERSSPGAVPVSRQY 678

  Fly   455 VRQPY--------------GPQDNFVSRLFGRPARSQYYRTINQNTA----TLIRRLSRSNL 498
            .|:||              |.......|.|.....||..:| .|:|.    |:|..|::|.|
  Fly   679 QRRPYYNANELKPEVVHDAGEDYQVNQRRFNSVVGSQPQQT-QQSTLLHSYTVIDSLNKSFL 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_609761.1 LRR <66..>230 CDD:443914 47/163 (29%)
leucine-rich repeat 76..99 CDD:275380 6/22 (27%)
leucine-rich repeat 100..123 CDD:275380 10/22 (45%)
leucine-rich repeat 124..147 CDD:275380 9/22 (41%)
leucine-rich repeat 148..171 CDD:275380 3/22 (14%)
leucine-rich repeat 172..195 CDD:275380 6/22 (27%)
leucine-rich repeat 196..219 CDD:275380 6/22 (27%)
LrtNP_001286640.1 LRR 175..582 CDD:443914 89/357 (25%)
leucine-rich repeat 179..199 CDD:275378
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 225..248 CDD:275380
leucine-rich repeat 249..272 CDD:275380
leucine-rich repeat 273..296 CDD:275380
leucine-rich repeat 297..322 CDD:275380 5/13 (38%)
leucine-rich repeat 323..347 CDD:275380 5/28 (18%)
leucine-rich repeat 348..371 CDD:275380 6/22 (27%)
leucine-rich repeat 372..395 CDD:275380 10/22 (45%)
leucine-rich repeat 396..419 CDD:275380 12/46 (26%)
leucine-rich repeat 420..443 CDD:275380 6/22 (27%)
leucine-rich repeat 444..467 CDD:275380 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.