DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18480 and kek3

DIOPT Version :9

Sequence 1:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001162986.1 Gene:kek3 / 34912 FlyBaseID:FBgn0028370 Length:1021 Species:Drosophila melanogaster


Alignment Length:258 Identity:78/258 - (30%)
Similarity:115/258 - (44%) Gaps:39/258 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KPKMWLGLKQILLYVGLLLCVLLQVCRSKTQSQMFCPTVCHCDLHAQRNRAVCSAKRLISANI-E 71
            :|::.|.| .:||:   |||    .|....|.:..||.||.|...:.:...:|     ::||: .
  Fly    52 RPRLPLHL-HLLLW---LLC----CCSQLGQLRAECPAVCECKWKSGKESVLC-----LNANLTH 103

  Fly    72 IPTTV----ELLDLSYNDITTIDDDSFKTTIHLLNLT---LAHNAIHTLYGDAFVELTRLRYLDL 129
            ||..:    :|||||.|:|..|.|||| .|..||||.   ||...:..:...||.:|..|..|||
  Fly   104 IPQPLDAGTQLLDLSGNEIQLIPDDSF-ATAQLLNLQKVYLARCHLRLIERHAFRKLINLVELDL 167

  Fly   130 SYNRLEQIDEHILESNNQLIHLNLEGNKLSTLGKGPILR--------SPSLRSLNLRNSQVNQLG 186
            |.|.|..|....|...::|..|.|.||        ||||        .|.|..|.|.:.:::.:.
  Fly   168 SQNLLSAIPSLALYHVSELRELRLSGN--------PILRVPDDAFGHVPQLVKLELSDCRLSHIA 224

  Fly   187 TQLLSAL-PQLRQLDLAQNLLLTLSPGDFHAPRNLASLNVEENPFNCDRALAKVATGLRQRGV 248
            .:..:.| ..|..|.|..|.|..:..|...:..:|..|.:..|.:||..:|..:...:.|:.:
  Fly   225 VRAFAGLESSLEWLKLDGNRLSEVRSGTITSLASLHGLELARNTWNCSCSLRPLRAWMLQQNI 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 28/66 (42%)
LRR_RI <76..230 CDD:238064 54/169 (32%)
leucine-rich repeat 76..99 CDD:275380 13/26 (50%)
leucine-rich repeat 100..123 CDD:275380 9/25 (36%)
LRR_8 122..182 CDD:290566 22/67 (33%)
leucine-rich repeat 124..147 CDD:275380 9/22 (41%)
leucine-rich repeat 148..171 CDD:275380 9/30 (30%)
LRR_8 170..230 CDD:290566 14/60 (23%)
leucine-rich repeat 172..195 CDD:275380 4/23 (17%)
leucine-rich repeat 196..219 CDD:275380 6/22 (27%)
kek3NP_001162986.1 LRR_RI <110..267 CDD:238064 53/165 (32%)
leucine-rich repeat 112..137 CDD:275380 14/25 (56%)
LRR_8 137..196 CDD:290566 21/66 (32%)
leucine-rich repeat 138..161 CDD:275380 6/22 (27%)
leucine-rich repeat 162..185 CDD:275380 9/22 (41%)
LRR_8 184..245 CDD:290566 18/68 (26%)
leucine-rich repeat 186..209 CDD:275380 9/30 (30%)
leucine-rich repeat 210..234 CDD:275380 4/23 (17%)
leucine-rich repeat 235..258 CDD:275380 6/22 (27%)
LRRCT 267..316 CDD:214507 5/21 (24%)
IG_like 328..428 CDD:214653
Ig 335..425 CDD:143165
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24366
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.