DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18480 and Lgi1

DIOPT Version :9

Sequence 1:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_665712.1 Gene:Lgi1 / 252892 RGDID:628742 Length:557 Species:Rattus norvegicus


Alignment Length:173 Identity:55/173 - (31%)
Similarity:80/173 - (46%) Gaps:16/173 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LKQILLYVGLLLCVLLQVCRSKTQSQMFCPTVCHCDLHAQRNRAVCSAKRLISANIEIPTTV--E 77
            ||:|..::.|...|||  ...|..::..||.||.|    .::.|:|...|      .||.||  :
  Rat    16 LKRIAYFLCLFSVVLL--TEGKKPAKPKCPAVCTC----SKDNALCENAR------SIPRTVPPD 68

  Fly    78 LLDLSY--NDITTIDDDSFKTTIHLLNLTLAHNAIHTLYGDAFVELTRLRYLDLSYNRLEQIDEH 140
            ::.||:  :..|.|.:.||..|..|..|....|:...:..|||:.|..|.||.:..|.::.|..|
  Rat    69 VISLSFVRSGFTEISEGSFLFTPSLQLLLFTSNSFDVISDDAFIGLPHLEYLFIENNNIKSISRH 133

  Fly   141 ILESNNQLIHLNLEGNKLSTLGKGPILRSPSLRSLNLRNSQVN 183
            .......||||:|..|.|.||.|.......||.:::||.:..|
  Rat   134 TFRGLKSLIHLSLANNNLQTLPKDIFKGLDSLTNVDLRGNSFN 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 20/63 (32%)
LRR_RI <76..230 CDD:238064 36/112 (32%)
leucine-rich repeat 76..99 CDD:275380 8/26 (31%)
leucine-rich repeat 100..123 CDD:275380 7/22 (32%)
LRR_8 122..182 CDD:290566 20/59 (34%)
leucine-rich repeat 124..147 CDD:275380 6/22 (27%)
leucine-rich repeat 148..171 CDD:275380 10/22 (45%)
LRR_8 170..230 CDD:290566 5/14 (36%)
leucine-rich repeat 172..195 CDD:275380 4/12 (33%)
leucine-rich repeat 196..219 CDD:275380
Lgi1NP_665712.1 leucine-rich repeat 71..92 CDD:275378 7/20 (35%)
LRR_8 91..151 CDD:404697 19/59 (32%)
LRR 1 92..113 6/20 (30%)
leucine-rich repeat 93..116 CDD:275378 7/22 (32%)
LRR 2 116..137 6/20 (30%)
leucine-rich repeat 117..140 CDD:275378 6/22 (27%)
LRR 3 140..161 10/20 (50%)
leucine-rich repeat 141..164 CDD:275378 10/22 (45%)
PCC 146..>221 CDD:188093 11/31 (35%)
leucine-rich repeat 165..177 CDD:275378 4/12 (33%)
EAR 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 225..267
EPTP 225..264 CDD:397689
EAR 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 271..313
EPTP 272..310 CDD:397689
EAR 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 317..364
EPTP 317..361 CDD:397689
EAR 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 366..415
EAR 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 419..462
EPTP 420..459 CDD:397689
EAR 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 464..506
EPTP 464..502 CDD:397689
EAR 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 510..552
EPTP 510..549 CDD:397689
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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