DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18480 and Lrrc55

DIOPT Version :9

Sequence 1:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:XP_006499531.1 Gene:Lrrc55 / 241528 MGIID:2685197 Length:311 Species:Mus musculus


Alignment Length:251 Identity:68/251 - (27%)
Similarity:99/251 - (39%) Gaps:40/251 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 CVTKPKM--------WLGLKQILLYVGLLLCVLLQVCRSKTQSQMFCPTVCHCDLHAQRNRAV-C 60
            |...|||        |.|.....|   ||:..||......:.:...||.:|.|     ||:.| |
Mouse     8 CCQLPKMGDTWAQLPWPGPPHSAL---LLVFFLLAAGVMHSDAGTSCPVLCTC-----RNQVVDC 64

  Fly    61 SAKRLISANIEIPTTVELLDLSYNDITTIDDDSFKTTIHLLNLTLAHNAIHTLYGDAFVELTRLR 125
            |.:||.|...::|.....|.|::|.|..:........:.|..|.|.:|::..|....|:...||.
Mouse    65 SNQRLFSVPPDLPMDTRNLSLAHNRIAAVPPGYLTCYMELRVLDLRNNSLMELPPGLFLHAKRLA 129

  Fly   126 YLDLSYNRLEQIDEHILESNNQLIHLNLEGNKLSTLGKGPILRSPSLRSLNLRNSQVNQLGTQLL 190
            :||||||.|..:...:....:.|:|::|..|             |.||.::          .|..
Mouse   130 HLDLSYNNLSHVPADMFREAHGLVHIDLSHN-------------PWLRRVH----------PQAF 171

  Fly   191 SALPQLRQLDLAQNLLLTLSPGDFHAPRNLASLNVEENPFNCDRALAKVATGLRQR 246
            ..|..||.|||:...|..||.........|.:|.:..||:.|...:..:...||.|
Mouse   172 QGLVHLRDLDLSYGGLAFLSLEALEGLPGLVTLQIGGNPWVCGCTMEPLLKWLRNR 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 18/59 (31%)
LRR_RI <76..230 CDD:238064 39/153 (25%)
leucine-rich repeat 76..99 CDD:275380 4/22 (18%)
leucine-rich repeat 100..123 CDD:275380 6/22 (27%)
LRR_8 122..182 CDD:290566 16/59 (27%)
leucine-rich repeat 124..147 CDD:275380 8/22 (36%)
leucine-rich repeat 148..171 CDD:275380 4/22 (18%)
LRR_8 170..230 CDD:290566 16/59 (27%)
leucine-rich repeat 172..195 CDD:275380 4/22 (18%)
leucine-rich repeat 196..219 CDD:275380 8/22 (36%)
Lrrc55XP_006499531.1 LRRNT 51..82 CDD:214470 13/35 (37%)
leucine-rich repeat 60..79 CDD:275380 7/18 (39%)
leucine-rich repeat 80..103 CDD:275380 4/22 (18%)
LRR_8 103..161 CDD:338972 19/70 (27%)
leucine-rich repeat 104..127 CDD:275380 6/22 (27%)
leucine-rich repeat 128..151 CDD:275380 8/22 (36%)
LRR_8 151..210 CDD:338972 19/81 (23%)
leucine-rich repeat 152..176 CDD:275380 9/46 (20%)
leucine-rich repeat 177..200 CDD:275380 8/22 (36%)
TPKR_C2 209..260 CDD:387596 6/19 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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