DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18480 and Lrrc52

DIOPT Version :9

Sequence 1:NP_001285960.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_001013400.1 Gene:Lrrc52 / 240899 MGIID:1924118 Length:314 Species:Mus musculus


Alignment Length:326 Identity:84/326 - (25%)
Similarity:114/326 - (34%) Gaps:67/326 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KQILLYVGLLLCVLLQVCRSKTQSQMFCPTVCHCDLHAQRNRAVCSAKRLISANIEIPTTVELLD 80
            |.:|..:|:.|     |..||      ||..|.|    |.....|....|.....:||.....|.
Mouse    10 KLLLFSLGMGL-----VSGSK------CPNKCVC----QDQEVACIDLHLTEYPADIPLNTRRLY 59

  Fly    81 LSYNDITTIDDDSFKTTIHLLNLTLAHNAIHTLYGDAFVELTRLRYLDLSYNRLEQIDEHILESN 145
            |:.|.||::..........|:.|...:|.|..:....|:.:.||.|||||.|.|..|........
Mouse    60 LNNNKITSLPALQLGFLSDLVYLDCQNNRIREVMDYTFIGIFRLIYLDLSSNNLTSISPFSFSVL 124

  Fly   146 NQLIHLNLEGN-KLSTLGKGPILRSPSLRSLNLRNSQVN-----------QLGTQLLSALPQLRQ 198
            ..|:.||:..| .|..|.|.....:.|||.|:|||:.::           .|.|..||..|.:..
Mouse   125 TNLVRLNISHNPHLLYLDKYVFANTTSLRYLDLRNTGLHIIDHNGFHHLVVLQTLYLSGNPWICN 189

  Fly   199 ---LDLAQNLLLTLSPGDFHAPRNLASLNVEE----------NPFN------------------- 231
               ||...:||  :|..|....:|.......|          ||..                   
Mouse   190 CSFLDFTIHLL--VSHMDHPDAQNATCTEPAELKGWPITKVGNPLQYMCITHLDQQDYIFLLLIG 252

  Fly   232 -CDRALAKVATGLRQRGV-AIFMSNCMEEEVQDHQDDAEAVNFPNKNEKFESMEYLEPSTRGPQS 294
             |..|...||..|  .|| |:...|.:.....|..:|.....|  .|:.|.|..:|.|..|.|:.
Mouse   253 FCIFAAGTVAAWL--TGVCAVLYQNALRTSSGDDTEDETGSRF--ANQIFRSNTHLGPIRRFPEL 313

  Fly   295 V 295
            :
Mouse   314 I 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_001285960.1 LRR_8 74..134 CDD:290566 18/59 (31%)
LRR_RI <76..230 CDD:238064 48/178 (27%)
leucine-rich repeat 76..99 CDD:275380 5/22 (23%)
leucine-rich repeat 100..123 CDD:275380 5/22 (23%)
LRR_8 122..182 CDD:290566 24/60 (40%)
leucine-rich repeat 124..147 CDD:275380 9/22 (41%)
leucine-rich repeat 148..171 CDD:275380 7/23 (30%)
LRR_8 170..230 CDD:290566 21/83 (25%)
leucine-rich repeat 172..195 CDD:275380 10/33 (30%)
leucine-rich repeat 196..219 CDD:275380 6/25 (24%)
Lrrc52NP_001013400.1 leucine-rich repeat 35..54 CDD:275380 4/18 (22%)
LRR 1 54..73 5/18 (28%)
leucine-rich repeat 56..78 CDD:275380 5/21 (24%)
LRR 2 78..99 5/20 (25%)
LRR_8 79..136 CDD:316378 18/56 (32%)
leucine-rich repeat 79..102 CDD:275380 5/22 (23%)
LRR 3 102..123 10/20 (50%)
leucine-rich repeat 103..126 CDD:275380 9/22 (41%)
LRR_8 125..185 CDD:316378 18/59 (31%)
LRR 4 126..148 7/21 (33%)
leucine-rich repeat 127..151 CDD:275380 7/23 (30%)
LRR 5 151..172 7/20 (35%)
leucine-rich repeat 152..175 CDD:275380 6/22 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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