DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18480 and sym-1

DIOPT Version :10

Sequence 1:NP_609761.1 Gene:CG18480 / 34920 FlyBaseID:FBgn0028518 Length:550 Species:Drosophila melanogaster
Sequence 2:NP_510426.1 Gene:sym-1 / 181555 WormBaseID:WBGene00006366 Length:680 Species:Caenorhabditis elegans


Alignment Length:380 Identity:84/380 - (22%)
Similarity:148/380 - (38%) Gaps:110/380 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 NRAVCSAKRLISANIEIP-------------TTVELLDLSYNDITTIDDDSFKTTIHLLNLTLAH 107
            ::||.:...||:.:|:..             |::.:|.|:.|:|:.|...:.:.|.:|..|.|..
 Worm   198 SKAVRNMNNLIALHIKYNKINAIRQNDFVNLTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLNE 262

  Fly   108 NAIHTLYGDAFVELTRLRYLDLSYNRLEQIDEHILESNNQLIHLNLEGNKLSTLGKG-----PIL 167
            |.:.||......:..:|:.||||:|....|.:.:.|....:.||||:.|::|.:..|     |:|
 Worm   263 NNLQTLDNGVLEQFKQLQVLDLSFNNFTDITKEMFEGLESIQHLNLDSNRISAVAPGAFAGTPLL 327

  Fly   168 ------------------RSPSLRSLNLRNSQVNQLGTQLLSALPQLRQLDLAQNLLLTLSPGDF 214
                              .:|.||.::|.|:.:.::.......||.|..||||.|.:::|.....
 Worm   328 LLWLPNNCLTEVSQQTLKGAPFLRMVSLSNNNIREVHELSFDHLPNLHTLDLANNKIMSLQNKSL 392

  Fly   215 HAPRNLASLNVEENPFNCDRALAKVATGLR--QRGVAIFMSN----------------------- 254
            ..|.||| :.::|||..|      |..|..  ..|.||:::|                       
 Worm   393 SGPENLA-VRLQENPVVC------VKNGFHVLNSGEAIWLTNEANTICKGEWQAQTADLCPKAQP 450

  Fly   255 -------C----------------------MEEEVQDHQDDAEAVNFPNKNEKFESMEYLEPSTR 290
                   |                      .|||.::..:..|.|....|::|.::    ..:|.
 Worm   451 RPIRPVCCSNEITTTTTTTTTTTTLAPTTTTEEEKEETTETTEKVTTVGKSKKTKA----TTTTE 511

  Fly   291 GPQSVLSVWRDLD----SSEEQNSSQDDEQMSSLSDVCEGSREKLCLRYRICLER 341
            .|:....|:.|.|    ..||:..|..::..::.:...|.|:.|     ::.:||
 Worm   512 EPEDDEDVYVDDDEEGTEEEEEEVSTTEKSTTTTTTTTEASKSK-----KVNMER 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18480NP_609761.1 LRR <66..>230 CDD:443914 52/199 (26%)
leucine-rich repeat 76..99 CDD:275380 6/22 (27%)
leucine-rich repeat 100..123 CDD:275380 6/22 (27%)
leucine-rich repeat 124..147 CDD:275380 8/22 (36%)
leucine-rich repeat 148..171 CDD:275380 9/45 (20%)
leucine-rich repeat 172..195 CDD:275380 5/22 (23%)
leucine-rich repeat 196..219 CDD:275380 8/22 (36%)
sym-1NP_510426.1 leucine-rich repeat 62..81 CDD:275380
LRR <84..408 CDD:443914 56/210 (27%)
leucine-rich repeat 86..108 CDD:275380
leucine-rich repeat 110..133 CDD:275380
leucine-rich repeat 134..157 CDD:275380
leucine-rich repeat 158..182 CDD:275380
leucine-rich repeat 183..206 CDD:275380 2/7 (29%)
leucine-rich repeat 207..230 CDD:275380 3/22 (14%)
leucine-rich repeat 231..254 CDD:275380 6/22 (27%)
leucine-rich repeat 255..278 CDD:275380 6/22 (27%)
leucine-rich repeat 279..302 CDD:275380 8/22 (36%)
leucine-rich repeat 303..323 CDD:275380 7/19 (37%)
leucine-rich repeat 350..373 CDD:275380 5/22 (23%)
leucine-rich repeat 374..394 CDD:275380 7/19 (37%)
leucine-rich repeat 399..410 CDD:275378 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

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