DRSC/TRiP Functional Genomics Resources

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Protein Alignment Semp1 and nas-23

DIOPT Version :10

Sequence 1:NP_609756.1 Gene:Semp1 / 34914 FlyBaseID:FBgn0028944 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_001022281.1 Gene:nas-23 / 3565992 WormBaseID:WBGene00003542 Length:537 Species:Caenorhabditis elegans


Alignment Length:239 Identity:70/239 - (29%)
Similarity:103/239 - (43%) Gaps:35/239 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 YQGDIKA--------------HPIRTRNGIVNQIYH---W-PNRTVPYMIEDDAFADSHYREILR 77
            :||||..              |....|....|.:|.   | ||  ||:.:.....|.|. ..::.
 Worm    85 FQGDIHLSFEHLSNIVREQLDHSRTKRTAFRNAMYPKTIWLPN--VPFELHGSLSAKSR-SSLVA 146

  Fly    78 AISIIEENSCVIFKPATEMDFPMALVITSKGLGC-NTVHLGYRNKTQVVNLEIYPLGEGCFRIGS 141
            |::..|:::||.||..|..  .:.|:::.:..|| :||........|::|     :|.||...|.
 Worm   147 AMAFWEKHTCVAFKKRTSE--KVYLLMSGQEEGCWSTVGRDEAQGAQILN-----IGTGCEMFGI 204

  Fly   142 IIHELLHVLGFEHQHVSQNRDQYVSIQWKNINPQ--YNINFVNNDNSTAWHDFDEGYDYESVMHY 204
            ..||:.|.||..|:....:||.||.|....|...  |:...|...|   ...:.:.||..|||||
 Worm   205 TSHEIAHALGLFHEQSRYDRDNYVQIVKSRIAQTNFYDFAVVGKKN---METYGQKYDIGSVMHY 266

  Fly   205 VPRAFSRNGQPTIVPLREGAEN-MGQRFYMSEKDIRKLNKMYRC 247
            .|..||.:|..:|:......:| |||....|..|:.|:|:.|.|
 Worm   267 RPTEFSLDGGNSIIAKDVNMQNTMGQFRGPSFIDVAKINRHYNC 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Semp1NP_609756.1 ZnMc_astacin_like 55..245 CDD:239807 58/193 (30%)
nas-23NP_001022281.1 ZnMc_astacin_like 128..308 CDD:239807 57/190 (30%)
CUB 384..454 CDD:412131
Blue background indicates that the domain is not in the aligned region.

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