DRSC/TRiP Functional Genomics Resources

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Protein Alignment Semp1 and nas-30

DIOPT Version :10

Sequence 1:NP_609756.1 Gene:Semp1 / 34914 FlyBaseID:FBgn0028944 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_490795.5 Gene:nas-30 / 190803 WormBaseID:WBGene00003548 Length:741 Species:Caenorhabditis elegans


Alignment Length:223 Identity:55/223 - (24%)
Similarity:107/223 - (47%) Gaps:32/223 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 HPIRTRNGIVNQIYHWPNRTVPYMIEDDAFADSHYREILR-AISIIEENSCVIFK---PATEMDF 98
            |..:.|..|...:|.|.: .:|:..:.   .|:.:::::| .:.:.|:.:||.:.   |..:   
 Worm   318 HGRKKRKVITGSVYRWKS-VIPFRFKG---GDAKWKKLIREGLGLWEKETCVRWSENGPGKD--- 375

  Fly    99 PMALVITSKGLGCNTVHLGYRNKTQVVNLEIYPLGEGCFRIGSIIHELLHVLGFEHQHVSQNRDQ 163
               .||..:|.||.: .:|....:|:::     :|.||...|.:.||:.|.|||.|:....:||.
 Worm   376 ---YVIFFRGSGCYS-SVGRTGGSQLIS-----IGYGCEDKGIVAHEVGHSLGFWHEQSRPDRDD 431

  Fly   164 YVSIQWKNINPQYNINFVNNDNSTAWHDFDE---GYDYESVMHYVPRAFSRNGQPTIVPLREG-- 223
            |:.::...|....:.||    ...:|.:.::   .||..|||||...||:::.....:..::.  
 Worm   432 YIHLRKDWIIKGTDGNF----EKRSWEEIEDMGVPYDVGSVMHYGSNAFTKDWDQITIETKDSRY 492

  Fly   224 AENMGQRFYMSEKDIRKLNKMY---RCP 248
            ...:|||..:|..|::::|::|   .||
 Worm   493 QGTIGQRQKLSFIDVKQVNRLYCNSVCP 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Semp1NP_609756.1 ZnMc_astacin_like 55..245 CDD:239807 47/198 (24%)
nas-30NP_490795.5 ZnMc_astacin_like 336..514 CDD:239807 47/196 (24%)
CUB 564..648 CDD:412131
Blue background indicates that the domain is not in the aligned region.

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