DRSC/TRiP Functional Genomics Resources

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Protein Alignment Semp1 and nas-3

DIOPT Version :10

Sequence 1:NP_609756.1 Gene:Semp1 / 34914 FlyBaseID:FBgn0028944 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_505445.2 Gene:nas-3 / 187045 WormBaseID:WBGene00003522 Length:292 Species:Caenorhabditis elegans


Alignment Length:286 Identity:71/286 - (24%)
Similarity:106/286 - (37%) Gaps:80/286 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VIFL----FTPTVFSELFKDPELLAGF----------YQGDIKAH-PIRTRNGIVN-----QIYH 52
            :||.    .|.:..||..||.|:....          ...||... |:|.:.||..     :.:.
 Worm     5 IIFFSLLALTASKVSEPEKDDEIAVKIPTKRSVSEPPKDDDIAVKIPMRKKRGIAIHPWQWESHL 69

  Fly    53 WPNRTVPYMIEDDAFADSHYRE-----ILRAISIIEENSCVIFKPATEMD---------FPMALV 103
            |||..|||.|.      |||..     ||.|:....:.:||.|:|....|         :.:...
 Worm    70 WPNAEVPYDIA------SHYTATERGIILSAMEAFRDVTCVRFRPRRSTDKHYLQINKHYQLERC 128

  Fly   104 ITSKGLGCNTVHLGYRNKTQVVNLEIYPLGEGCFRI---GSIIHELLHVLGFEHQHVSQNRDQYV 165
            .:..|...:....|.|:......:::.|   .|...   |:::|||:|:|||.|:|...:||:.:
 Worm   129 FSYIGRQSSRWLFGTRDGKVETRMKLDP---SCLLYNGRGTVMHELMHILGFYHEHQRDDRDRRI 190

  Fly   166 SIQWKNINPQYNINFVNNDNSTAWHDFDEGYDYESVMHYVPRAFSRNGQPTIVPLREGAENMG-- 228
            .    .....||........|.    :..|||..|:|||                     |.|  
 Worm   191 G----GSASHYNFKIYQRAKSY----YMGGYDANSIMHY---------------------NFGSV 226

  Fly   229 ---QRFYMSEKDIRKLNKMYRCPDHV 251
               :|.|.|..|||.:|.:|:|.:.|
 Worm   227 PWQKRDYFSPSDIRNINTLYKCNNRV 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Semp1NP_609756.1 ZnMc_astacin_like 55..245 CDD:239807 52/211 (25%)
nas-3NP_505445.2 ZnMc 72..246 CDD:469599 52/211 (25%)

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