DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Semp1 and nas-17

DIOPT Version :9

Sequence 1:NP_609756.1 Gene:Semp1 / 34914 FlyBaseID:FBgn0028944 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_505892.1 Gene:nas-17 / 186923 WormBaseID:WBGene00003536 Length:448 Species:Caenorhabditis elegans


Alignment Length:236 Identity:66/236 - (27%)
Similarity:109/236 - (46%) Gaps:39/236 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GFYQGDI--KAHPIRTRNGI-------VNQIY-HWPNRTVPYMIEDDAFADSHYREILR-AISII 82
            |...|||  ....:|..||.       :.:|: .||:..|.|..|::  ..|..||::. |::.|
 Worm    56 GIVDGDIMLTEAQLRILNGTAKRSKRQITKIWKKWPDAKVFYYYENE--FTSLKRELMSYAMAHI 118

  Fly    83 EENSCVIFKPATEMDFPMALVITSKGLGCNTVHLGYRNKTQVVNLEIYPLGEGCFRIGSIIHELL 147
            ..|:||.|:.:...  ...:..|:.| ||.: ::|.....|.:     ..|:||...|:.:||::
 Worm   119 SSNTCVKFQESNSA--TNRIRFTNTG-GCAS-YIGMNGGEQTL-----WFGDGCLIFGTAVHEIM 174

  Fly   148 HVLGFEHQHVSQNRDQYVSIQWKNINPQYNINFVNN-DNSTAWHDFDE-GYDYESVMHYVPRAFS 210
            |.||..|.|...:||.::|:.:|:: |:   |.|.| :..|....::. .::|.|.|.|....| 
 Worm   175 HSLGLFHTHSRFDRDNFLSVSYKDV-PE---NMVGNLEKETEQTTYNAVPFEYGSTMLYRYNTF- 234

  Fly   211 RNGQPTIVPLREG-AENMGQR---FYMSEKDIRKLNKMYRC 247
              |:.|:|...|. .:.||.|   ||    |:..:|..|.|
 Worm   235 --GEGTLVSKNEDYQKTMGLRRVSFY----DLVNINVRYSC 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Semp1NP_609756.1 Astacin 53..249 CDD:279708 58/202 (29%)
ZnMc_astacin_like 55..245 CDD:239807 54/196 (28%)
nas-17NP_505892.1 Astacin 88..271 CDD:279708 58/204 (28%)
ZnMc_astacin_like 92..267 CDD:239807 54/196 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3714
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D681837at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10127
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.