DRSC/TRiP Functional Genomics Resources

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Protein Alignment Semp1 and Mep1b

DIOPT Version :9

Sequence 1:NP_609756.1 Gene:Semp1 / 34914 FlyBaseID:FBgn0028944 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_032612.2 Gene:Mep1b / 17288 MGIID:96964 Length:704 Species:Mus musculus


Alignment Length:225 Identity:75/225 - (33%)
Similarity:112/225 - (49%) Gaps:27/225 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 YQGDIKAHPIRTRNGIVNQIYHWPNRTVPYMIEDDAFADSHYREILRAISIIEENSCVIFKP-AT 94
            ::||||.. ...:|.|:.....||: |:||::||....::. ..||.|.......:|:.||| :.
Mouse    51 FEGDIKLE-ANGKNSIIGDHKRWPH-TIPYVLEDSLEMNAK-GVILNAFERYRLKTCIDFKPWSG 112

  Fly    95 EMDFPMALVITSKGLGC----NTVHLGYRNKTQVVNLEIYPLGEGCFRIGSIIHELLHVLGFEHQ 155
            |.::    :...||.||    ..:|.|.:..:         :|..|.||.::.||.||.|||.|:
Mouse   113 EANY----ISVFKGSGCWSSVGNIHAGKQELS---------IGTNCDRIATVQHEFLHALGFWHE 164

  Fly   156 HVSQNRDQYVSIQWKNINP--QYNINFVNNDNSTAWHDFDEGYDYESVMHYVPRAFSRNGQPTIV 218
            ....:||.||.|.|..|.|  ::|.|..|:..|.:   .:..|||.|||||...||....:.|||
Mouse   165 QSRADRDDYVIIVWDRIQPGKEHNFNIYNDSVSDS---LNVPYDYTSVMHYSKTAFQNGTESTIV 226

  Fly   219 P-LREGAENMGQRFYMSEKDIRKLNKMYRC 247
            . :.|..:.:|||...|:.|:.|||::|.|
Mouse   227 TRISEFEDVIGQRMDFSDYDLLKLNQLYNC 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Semp1NP_609756.1 Astacin 53..249 CDD:279708 69/203 (34%)
ZnMc_astacin_like 55..245 CDD:239807 65/197 (33%)
Mep1bNP_032612.2 ZnMc 30..256 CDD:294052 74/223 (33%)
Astacin 70..258 CDD:279708 69/205 (34%)
MAM 266..430 CDD:279023
MAM 266..428 CDD:99706
MATH 428..587 CDD:295307
EGF_CA 609..647 CDD:238011
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3714
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10127
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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