DRSC/TRiP Functional Genomics Resources

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Protein Alignment Semp1 and Mep1a

DIOPT Version :10

Sequence 1:NP_609756.1 Gene:Semp1 / 34914 FlyBaseID:FBgn0028944 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_032611.2 Gene:Mep1a / 17287 MGIID:96963 Length:760 Species:Mus musculus


Alignment Length:235 Identity:82/235 - (34%)
Similarity:119/235 - (50%) Gaps:24/235 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LLAG--FYQGDIKAHPIRTRNGIVNQIYHWPNRTVPYMIEDDAFADSHYREILRAISIIEENSCV 88
            |.||  .:||||...  ||||.:.:....| ...:||::.|:...::. ..||.|..:....|||
Mouse    60 LAAGLNLFQGDILLP--RTRNAMRDPSSRW-KLPIPYILADNLELNAK-GAILHAFEMFRLKSCV 120

  Fly    89 IFKPATEMDFPMALVITSKGLGCNTVHLGYRNKTQVVNLEIYPLGEGCFRIGSIIHELLHVLGFE 153
            .|||   .:...:.:|..|..||.:: :|.:...|.::     :||||....:|.||:||.|||.
Mouse   121 DFKP---YEGESSYIIFQKLSGCWSM-IGDQQVGQNIS-----IGEGCDFKATIEHEILHALGFF 176

  Fly   154 HQHVSQNRDQYVSIQWKNINPQYNINFVNNDNSTAWHDFDEGYDYESVMHYVPRAFSRNGQ-PTI 217
            |:....:||.||:|.|..|...|..||...|::|. .|.:..|||||:|||.|.:|::|.. |||
Mouse   177 HEQSRTDRDDYVNIWWDQIITDYEHNFNTYDDNTI-TDLNTPYDYESLMHYGPFSFNKNESIPTI 240

  Fly   218 -VPLREGAENMGQRFYMSEKDIRKLNKMYRCP------DH 250
             ..:.|....:||....|..|:.:||:||.|.      ||
Mouse   241 TTKIPEFNTIIGQLPDFSAIDLIRLNRMYNCTATHTLLDH 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Semp1NP_609756.1 ZnMc_astacin_like 55..245 CDD:239807 65/191 (34%)
Mep1aNP_032611.2 ZnMc 46..271 CDD:469599 79/224 (35%)
MAM 281..444 CDD:459878 82/235 (35%)
MATH 443..607 CDD:445786
EGF 688..722 CDD:394967
Blue background indicates that the domain is not in the aligned region.

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