DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Semp1 and astl2d.4

DIOPT Version :10

Sequence 1:NP_609756.1 Gene:Semp1 / 34914 FlyBaseID:FBgn0028944 Length:251 Species:Drosophila melanogaster
Sequence 2:XP_004913426.2 Gene:astl2d.4 / 101734297 XenbaseID:XB-GENE-22069748 Length:537 Species:Xenopus tropicalis


Alignment Length:226 Identity:77/226 - (34%)
Similarity:113/226 - (50%) Gaps:30/226 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 QGDIKAHPIRTRNGIVNQIYHWP--NRT--VPYMIEDDAFADSHYREILRAISIIEENSCVIFKP 92
            ||||.....|:.....|.:  ||  |.|  |||.: ||.::::....|..|:.:....:||.|.|
 Frog   100 QGDIAIGVSRSALNCTNCL--WPKTNGTVYVPYTL-DDEYSNNEVNTITAAMQVYATLTCVQFVP 161

  Fly    93 ATEMDFPMALVITSKGLGCNTVHLGYRNKTQVVNLEIYPLGEG-CFRIGSIIHELLHVLGFEHQH 156
            .|:.|..:|:   ....||.: ::|.:...|||::|     :| |...|:.:|||.|.|||.|:.
 Frog   162 YTDEDDYVAI---KSANGCWS-YMGRQGGAQVVSVE-----KGYCTSEGTTMHELNHALGFVHEQ 217

  Fly   157 VSQNRDQYVSIQWKNINPQYNINF----VNNDNSTAWHDFDEGYDYESVMHYVPRAFSR-NGQPT 216
            ...:||.||:|.::.|:|...:||    .||.|:.        |||.|:|||...|||. .||.|
 Frog   218 SRSDRDNYVNIMYQYISPGDIVNFEIMNTNNLNTI--------YDYRSIMHYPAWAFSNTTGQNT 274

  Fly   217 IVPLREGAENMGQRFYMSEKDIRKLNKMYRC 247
            ||........:|....|:..||.|:|::|.|
 Frog   275 IVAKPNPNIIIGAGSTMTSLDIIKINRLYEC 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Semp1NP_609756.1 ZnMc_astacin_like 55..245 CDD:239807 67/197 (34%)
astl2d.4XP_004913426.2 ZnMc_hatching_enzyme 123..305 CDD:239810 68/199 (34%)
CUB 308..417 CDD:395345
CUB 422..533 CDD:238001
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.