DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kek3 and LINGO1

DIOPT Version :9

Sequence 1:NP_001162986.1 Gene:kek3 / 34912 FlyBaseID:FBgn0028370 Length:1021 Species:Drosophila melanogaster
Sequence 2:NP_116197.4 Gene:LINGO1 / 84894 HGNCID:21205 Length:620 Species:Homo sapiens


Alignment Length:562 Identity:126/562 - (22%)
Similarity:181/562 - (32%) Gaps:198/562 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 RRTLATKVRRKGPRPQRRLHPPLRPRLPLHLHLLLWLLCCCSQLGQLRAECPAVCECKWKSGKES 93
            :|.||..||.. |.|......|:       |.|:|..:...|..|     ||..|||  .:...:
Human     5 KRMLAGGVRSM-PSPLLACWQPI-------LLLVLGSVLSGSATG-----CPPRCEC--SAQDRA 54

  Fly    94 VLCLNANLTHIPQPLDAGTQLLDLSGNEIQLIPDDSFAT----------------------AQLL 136
            |||.......:|:.:...|:||||..|.|:.:..|.||:                      ..|.
Human    55 VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 119

  Fly   137 NLQKVYLARCHLRLIERHAFRKLINLVELDLSQNL------------------------------ 171
            ||:.:.|....|:||....|..|.||.:||:|:|.                              
Human   120 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 184

  Fly   172 ----------------------------------------------------------------- 171
                                                                             
Human   185 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 249

  Fly   172 -------------------------LSAIPSLALYHVSELRELRLSGNPILRVPDDAFGHVPQLV 211
                                     |:|:|.||:.|:..||.|.||.|||..:.......:.:|.
Human   250 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 314

  Fly   212 KLELSDCRLSHIAVRAFAGLESSLEWLKLDGNRLSEVRSGTITSLASLHGLELARNTWNCSCSLR 276
            :::|...:|:.:...||.|| :.|..|.:.||:|:.:......|:.:|..|.|..|...|.|.|.
Human   315 EIQLVGGQLAVVEPYAFRGL-NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 378

  Fly   277 PL--RAWMLQQNIPSGIPPTCESPPRLSGRAW----DKLDVDDFACVPQIVATDTTAHGV---EG 332
            .:  |.|.|..|...   |||.:|..:.|:.:    |.|..:.|.| .:....|..|..|   ||
Human   379 WVFRRRWRLNFNRQQ---PTCATPEFVQGKEFKDFPDVLLPNYFTC-RRARIRDRKAQQVFVDEG 439

  Fly   333 RNITMSCYVEGVPQPAVKWLLKNRLIANLSAGGDGDSDSEPR---TAAATQGRKTYVVNMLRNAS 394
            ..:...|..:|.|.||:.||                   .||   .:|.:.||.|...:     .
Human   440 HTVQFVCRADGDPPPAILWL-------------------SPRKHLVSAKSNGRLTVFPD-----G 480

  Fly   395 NLTILTADMQDAGIYTCAAENKAGKVEASVTLAVSRRPPEAP 436
            .|.:..|.:||.|.|.|.|.|..|.......|.|....|:.|
Human   481 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYSPDWP 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kek3NP_001162986.1 LRR_RI <110..267 CDD:238064 55/298 (18%)
leucine-rich repeat 112..137 CDD:275380 11/46 (24%)
LRR_8 137..196 CDD:290566 26/178 (15%)
leucine-rich repeat 138..161 CDD:275380 7/22 (32%)
leucine-rich repeat 162..185 CDD:275380 11/142 (8%)
LRR_8 184..245 CDD:290566 19/60 (32%)
leucine-rich repeat 186..209 CDD:275380 8/22 (36%)
leucine-rich repeat 210..234 CDD:275380 7/23 (30%)
leucine-rich repeat 235..258 CDD:275380 6/22 (27%)
LRRCT 267..316 CDD:214507 16/54 (30%)
IG_like 328..428 CDD:214653 27/105 (26%)
Ig 335..425 CDD:143165 23/92 (25%)
LINGO1NP_116197.4 LRRNT 41..75 CDD:214470 11/40 (28%)
LRR <66..371 CDD:227223 57/305 (19%)
LRR 1 72..93 9/20 (45%)
leucine-rich repeat 73..96 CDD:275380 10/22 (45%)
LRR 2 96..117 0/20 (0%)
leucine-rich repeat 97..120 CDD:275380 1/22 (5%)
LRR_8 120..179 CDD:338972 14/58 (24%)
LRR 3 120..141 7/20 (35%)
leucine-rich repeat 121..144 CDD:275380 7/22 (32%)
LRR 4 144..165 6/20 (30%)
leucine-rich repeat 145..192 CDD:275380 5/46 (11%)
LRR 5 168..189 0/20 (0%)
LRR 6 192..213 0/20 (0%)
leucine-rich repeat 193..216 CDD:275380 0/22 (0%)
LRR 7 216..237 0/20 (0%)
leucine-rich repeat 217..264 CDD:275380 0/46 (0%)
LRR 8 264..285 5/20 (25%)
leucine-rich repeat 265..288 CDD:275380 6/22 (27%)
LRR 9 288..309 8/20 (40%)
leucine-rich repeat 289..312 CDD:275380 8/22 (36%)
LRR 10 312..333 5/20 (25%)
leucine-rich repeat 313..336 CDD:275380 7/23 (30%)
LRR 11 336..357 5/20 (25%)
leucine-rich repeat 337..357 CDD:275380 5/19 (26%)
PCC 341..>421 CDD:188093 23/82 (28%)
Ig 439..514 CDD:386229 25/98 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm41933
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

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