DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kek3 and lrrc4ba

DIOPT Version :9

Sequence 1:NP_001162986.1 Gene:kek3 / 34912 FlyBaseID:FBgn0028370 Length:1021 Species:Drosophila melanogaster
Sequence 2:XP_021329717.1 Gene:lrrc4ba / 556747 ZFINID:ZDB-GENE-080327-25 Length:729 Species:Danio rerio


Alignment Length:777 Identity:184/777 - (23%)
Similarity:280/777 - (36%) Gaps:217/777 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 PPLRPRLPLHLHLLLWLLCCCSQLGQLRAECPAVCECKWKSGKESVLCLNANLTHIPQPLDAGTQ 113
            |...|.|.|.:.|||.||....:.....:.|||||.|..::.:  |:|...:|..:|..:...|:
Zfish    10 PSPSPLLLLLVQLLLRLLLPGQEAVGAASTCPAVCSCSNQASR--VICARQHLEEVPDNISNNTR 72

  Fly   114 LLDLSGNEIQLIPDDSFATAQLLNLQKVYLARCHLRLIERHAFRKLINLVELDLSQNLLSAIPSL 178
            .|:|..|.||:|..|:|  ..|.:|:.:.|::..:|.||..||..|.||..|:|..|.|:.:||.
Zfish    73 YLNLQENTIQVIKSDTF--KHLRHLEILQLSKNQIRQIEVGAFNGLPNLNTLELFDNRLTLVPSQ 135

  Fly   179 ALYHVSELRELRLSGNPILRVPDDAFGHVPQLVKLELSDC-RLSHIAVRAFAGLES--------- 233
            |..::|:||||.|..|||..:|..||..||.|.:|:|.:. :|.:|:..||.||.:         
Zfish   136 AFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDYISDAAFVGLINLRYLNLGMC 200

  Fly   234 ------------SLEWLKLDGNRLSEVRSGTITSLA----------------------------- 257
                        .||.|:|.||||..:|.|:...|.                             
Zfish   201 GLKDIPNLTPLVRLEELELSGNRLEIIRPGSFQGLESLRKLWLMHSQMSVIERNAFDDLKNLEEL 265

  Fly   258 -----SLHGL--------------ELARNTWNCSCSLRPLRAWMLQQNIPSGIP--PTCESPPRL 301
                 |||.|              .|..|.|.|:|.:..| :|.|::.:||...  ..|.:||.|
Zfish   266 NLSHNSLHSLPHDLFTPLQKLERVHLNHNPWVCNCDVLWL-SWWLKETVPSNTTCCARCHAPPYL 329

  Fly   302 SGRAWDKLDVDDFAC-VPQIVATDTTAHGVEGRNITMSCYVEGVPQPAVKWLLKNRLIANLSAGG 365
            .|:...:||...|.| .|.||...|..:..||....:.|.. |....:|.|:             
Zfish   330 KGKYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCRT-GTSMTSVNWI------------- 380

  Fly   366 DGDSDSEPRTAAATQGRKTYVVNMLRNAS-NLTILTADMQDAGIYTCAAENKAGKVEASVTLAVS 429
                  .|.....|.|.....:::|.:.: |.|.:|  ::|.|.|||...|.||...|:..|.|:
Zfish   381 ------TPNGTLMTHGSYRVRISVLHDGTLNFTNVT--LRDTGQYTCMVTNSAGNTTATAVLNVT 437

  Fly   430 RRPPEAPWGVRIILLGAVAALLLVGGSSFAAICLCSLQRRRK----LR----------------- 473
                              ||.:.|..:.|..:.:.:::...:    ||                 
Zfish   438 ------------------AADVSVNYTYFTTVTVETVETTGEEDSALRTFNETFIHIPGPTPSGH 484

  Fly   474 LWNSVPPVRRSE------------------------SYEK--IEMTARTRPDLGGGASCGGGSAT 512
            ||:.|.|...|.                        ||..  .::...|:..:|...:....:|.
Zfish   485 LWHEVVPTTASSLSIFGSSSSPRATKPTFTVPISEPSYPSGLDDVMKTTKIIIGCFVAITFMAAV 549

  Fly   513 GAGLFHDAEEQGYLRAAHTPLNDNDAGQAAAIVNP----SAGSAQRRNGDYLHVSTHCDDEEEDQ 573
            ...:|:...:|..|...|.|      .:|..|:|.    .||:..|.:|        ........
Zfish   550 MLVVFYKLRKQHQLHKHHGP------ARAIEIINVEDEIGAGTGLRGSG--------ISGGSTVP 600

  Fly   574 QLHHHPQQQPASQHHPHPNQQQHQQRKGSQGHVVSASGANNSAPLEETDLHIPRLIDIGG--TDS 636
            |:......|....|||......:..|.....|.......||:.          ..:.:||  .::
Zfish   601 QIGSGGGGQSLRLHHPEIVNLPNLARADHLNHYYKPHHFNNNM----------MGLGLGGGLNNN 655

  Fly   637 ASSSISSQVDAAARLAGYAGHTWKTTPIATTKINSPHSKPVTSAAPSSLNTQATPYAHYGNH 698
            .:.|..|||.               |||:.|::      ||::.:.|.......|....|.|
Zfish   656 NNPSPCSQVQ---------------TPISCTQV------PVSAGSTSCSIPSPMPLPTLGIH 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kek3NP_001162986.1 LRR_RI <110..267 CDD:238064 66/226 (29%)
leucine-rich repeat 112..137 CDD:275380 10/24 (42%)
LRR_8 137..196 CDD:290566 24/58 (41%)
leucine-rich repeat 138..161 CDD:275380 8/22 (36%)
leucine-rich repeat 162..185 CDD:275380 8/22 (36%)
LRR_8 184..245 CDD:290566 29/82 (35%)
leucine-rich repeat 186..209 CDD:275380 12/22 (55%)
leucine-rich repeat 210..234 CDD:275380 9/45 (20%)
leucine-rich repeat 235..258 CDD:275380 11/56 (20%)
LRRCT 267..316 CDD:214507 17/50 (34%)
IG_like 328..428 CDD:214653 23/100 (23%)
Ig 335..425 CDD:143165 20/90 (22%)
lrrc4baXP_021329717.1 LRR <60..280 CDD:227223 67/221 (30%)
leucine-rich repeat 71..94 CDD:275380 10/24 (42%)
leucine-rich repeat 95..118 CDD:275380 8/22 (36%)
leucine-rich repeat 119..142 CDD:275380 8/22 (36%)
leucine-rich repeat 143..166 CDD:275380 12/22 (55%)
leucine-rich repeat 167..191 CDD:275380 9/23 (39%)
leucine-rich repeat 192..213 CDD:275380 0/20 (0%)
leucine-rich repeat 214..237 CDD:275380 11/22 (50%)
leucine-rich repeat 238..261 CDD:275380 0/22 (0%)
leucine-rich repeat 262..283 CDD:275380 4/20 (20%)
TPKR_C2 294..344 CDD:326558 17/50 (34%)
I-set 347..436 CDD:333254 27/110 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I12164
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8422
orthoMCL 1 0.900 - - OOG6_104601
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.