DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kek3 and Lingo4

DIOPT Version :9

Sequence 1:NP_001162986.1 Gene:kek3 / 34912 FlyBaseID:FBgn0028370 Length:1021 Species:Drosophila melanogaster
Sequence 2:NP_001102659.1 Gene:Lingo4 / 499668 RGDID:1562025 Length:618 Species:Rattus norvegicus


Alignment Length:690 Identity:156/690 - (22%)
Similarity:221/690 - (32%) Gaps:251/690 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AAGRAAATLEA-PG--PPSGQDIASDNSAQRRTLATKVRRKGPRPQRRLHPPLRPRLPLHLHLLL 63
            |..|.:|.|:| |.  .|.|.|.|:                .|:....|..||         |.|
  Rat     6 ALERCSAQLDAFPQLLRPQGMDAAT----------------APKQAWLLWSPL---------LFL 45

  Fly    64 WLLCCCSQLGQLRAECPAVCECKWKSGKESVLCLNANLTHIPQPLDAGTQLLDLSG--------- 119
            .||     .|...:.||.:|:|  .|...:|||.:..|..:|..|...|::|||||         
  Rat    46 LLL-----PGGSISSCPTLCDC--TSQTRAVLCAHRRLDTVPGGLPLDTEVLDLSGNRLWGLQRG 103

  Fly   120 ---------------------------------------------------------------NE 121
                                                                           |:
  Rat   104 MLSRLGQLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIVGPGIFSGLSALTLLDLRLNQ 168

  Fly   122 IQLIPDDSF----------------------ATAQLLNLQKVYLARCHLRLIERHAFRKL----- 159
            |.|..|.:|                      |.:.|..|..:.|.||:|..:...|..:|     
  Rat   169 IVLFLDGAFGELGSLQQLEVGDNHLVFVAPGAFSGLAKLSTITLERCNLSTVPGLALAQLPALVA 233

  Fly   160 INLVELDLSQ----------------------------------NL---------LSAIPSLALY 181
            :.|.|||:.:                                  ||         ||::|..||:
  Rat   234 LRLRELDIERLPSGALRGLGQLKELEIHHWPSLEALDPGSLVGLNLSSLAITHCNLSSVPFQALH 298

  Fly   182 HVSELRELRLSGNPILRVPDDAFGHVPQLVKLELSDCRLSHIAVRAFAGLESSLEWLKLDGNRLS 246
            |:|.|:.|.||.|||..:|......:.:|.:|.||...|:.||..||.|| ::...|.:..|.|.
  Rat   299 HLSFLQVLDLSQNPISAIPARRLSPLVRLQELRLSGACLTSIAAHAFHGL-TAFHLLDVADNALQ 362

  Fly   247 EVRSGTITSLASLHGLELARNTWNCSCSLRPLRAWM--LQQNIPSGI-PPTCESPPRLSGRAW-- 306
            .:......|...|..|.|:.|...|.|.|    .|:  |::.:..|. ||.|..|..:.|:..  
  Rat   363 TLEETAFPSPDKLVTLRLSGNPLTCDCRL----LWLLRLRRRLDFGTSPPACAGPQHVQGKNLRE 423

  Fly   307 --DKLDVDDFACVPQIVATDTTAHGV--EGRNITMSCYVEGVPQPAVKWLLKNRLIANLSAGGDG 367
              |.|....|.|.|.::........:  ||.:...||..:|.|.|.|.|:               
  Rat   424 FSDILPPGHFTCKPALIRKSGPRWVIAEEGGHAVFSCSGDGDPAPTVSWM--------------- 473

  Fly   368 DSDSEPRTAAATQGRKTYVVNMLR--NASNLTILTADMQDAGIYTCAAENKAGKVEASVTLAVSR 430
                  |...:..||    |..:|  ....|.|.:..::|.|.|.|...|.||.......|.|.:
  Rat   474 ------RPQGSWLGR----VGRVRVLEDGTLEIRSVQLRDRGAYVCVVSNVAGNDSLRTWLEVIQ 528

  Fly   431 RPPEAPWGV----RIILLG----------AVAALLLVGGSSF-AAICLCSLQRRRKLRLWNSVPP 480
            ..|  |.|.    .:.:.|          .||.:|.||...| .::.||.    ..:.||:    
  Rat   529 VEP--PNGTLSDPNVTMPGIPGPFSLDSRGVAMVLAVGFLPFLTSVTLCF----GLIALWS---- 583

  Fly   481 VRRSESYEKIEMT---ARTRPDLGGGASCGGGSATGAGLF 517
              :.:...|..||   ...||   .|....||:...|.||
  Rat   584 --KGKGRVKHHMTFDFVAPRP---SGDKNSGGNRVTAKLF 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kek3NP_001162986.1 LRR_RI <110..267 CDD:238064 59/298 (20%)
leucine-rich repeat 112..137 CDD:275380 13/118 (11%)
LRR_8 137..196 CDD:290566 25/106 (24%)
leucine-rich repeat 138..161 CDD:275380 7/27 (26%)
leucine-rich repeat 162..185 CDD:275380 12/65 (18%)
LRR_8 184..245 CDD:290566 22/60 (37%)
leucine-rich repeat 186..209 CDD:275380 8/22 (36%)
leucine-rich repeat 210..234 CDD:275380 11/23 (48%)
leucine-rich repeat 235..258 CDD:275380 4/22 (18%)
LRRCT 267..316 CDD:214507 15/55 (27%)
IG_like 328..428 CDD:214653 24/103 (23%)
Ig 335..425 CDD:143165 21/91 (23%)
Lingo4NP_001102659.1 leucine-rich repeat 87..110 CDD:275380 6/22 (27%)
LRR_8 88..145 CDD:290566 5/56 (9%)
LRR_4 88..126 CDD:289563 5/37 (14%)
LRR_RI 110..345 CDD:238064 42/234 (18%)
leucine-rich repeat 111..134 CDD:275380 0/22 (0%)
LRR_8 134..193 CDD:290566 5/58 (9%)
leucine-rich repeat 135..158 CDD:275380 0/22 (0%)
leucine-rich repeat 159..182 CDD:275380 5/22 (23%)
LRR_8 182..237 CDD:290566 9/54 (17%)
leucine-rich repeat 183..206 CDD:275380 2/22 (9%)
leucine-rich repeat 207..230 CDD:275380 7/22 (32%)
leucine-rich repeat 231..254 CDD:275380 4/22 (18%)
leucine-rich repeat 255..302 CDD:275380 8/46 (17%)
LRR_8 278..334 CDD:290566 20/55 (36%)
leucine-rich repeat 303..326 CDD:275380 8/22 (36%)
LRR_8 326..385 CDD:290566 19/59 (32%)
leucine-rich repeat 327..348 CDD:275380 9/20 (45%)
leucine-rich repeat 351..374 CDD:275380 4/22 (18%)
IG_like 445..526 CDD:214653 24/105 (23%)
Ig 456..526 CDD:299845 22/94 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46071
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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