DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kek3 and Flrt1

DIOPT Version :9

Sequence 1:NP_001162986.1 Gene:kek3 / 34912 FlyBaseID:FBgn0028370 Length:1021 Species:Drosophila melanogaster
Sequence 2:NP_001102630.1 Gene:Flrt1 / 499308 RGDID:1565152 Length:674 Species:Rattus norvegicus


Alignment Length:657 Identity:147/657 - (22%)
Similarity:201/657 - (30%) Gaps:221/657 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 WLLCCCSQLGQL-----RAECPAVCECKWKSGKESVLCLNANLTHIPQ----------------- 106
            ||..|...:..|     ...||:||.|    ....:.|.:..||.||.                 
  Rat    34 WLFLCYGLIAFLTEVIDSTTCPSVCRC----DNGFIYCNDRGLTSIPSDIPDDATTLYLQNNQIN 94

  Fly   107 ----PLDAGTQL-------------------------LDLSGNEIQLIPDDSFATAQLL------ 136
                |.|..|::                         |.|..|.::.|..||.|...||      
  Rat    95 NAGIPQDLKTKVKVQVIYLYENDLDEFPINLPRSLRELHLQDNNVRTIARDSLARIPLLEKLHLD 159

  Fly   137 ------------------NLQKVYLARCHLRLIER---HAFRKLINLVELDLSQNLLSAIPSLAL 180
                              .|:.::|:|.||..|..   |      .|.||.|..|.:|.||..|.
  Rat   160 DNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPH------TLEELRLDDNRISTIPLHAF 218

  Fly   181 YHVSELRELRLSGNPIL--RVPDDAFGHVPQLV----------------------KLELSDCRLS 221
            ..::.||.|.|.||.:.  |:.||.|..:..|.                      ||.|.|..:|
  Rat   219 KGLNSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLNLPSAHLQKLYLQDNAIS 283

  Fly   222 HIAVRAFAGLESSLEWLKLDGNRLSEVRSGTITSLASLHGLELARNTWNCSCSLRPLRAWMLQQ- 285
            ||.....|.:. .||.|.|..|.|:.:..|....|.:|..|.|..|.|.|.|:|..||.|:..: 
  Rat   284 HIPYNTLAKMR-ELERLDLSNNNLTTLPRGLFDDLGNLAQLLLRNNPWFCGCNLMWLRDWVKARA 347

  Fly   286 ---NIPSGIPPTCESPPRLSGRAWDKLDVDDFAC--------VPQIVATDTTAHGVEGRNITMSC 339
               |: .|:  .|:.|.::.|.|...:..:...|        .....|..|.::.........|.
  Rat   348 AVVNV-RGL--MCQGPEKVRGMAIKDITSEMDECFEAGSQGSAANAAAKTTASNHASATTPQGSL 409

  Fly   340 YVEGVPQPAVKWLLKNRLIANLSAGGDG-----------DSDS---------------------- 371
            :.....:|.::  |.:..|....|.|||           .:||                      
  Rat   410 FTLKAKRPGLR--LPDSNIDYPMATGDGAKTLVIQVKPLTADSIRITWKAMLPASSFRLSWLRLG 472

  Fly   372 -EPRTAAAT----QGRKT-YVVNMLRNASNLTILTADMQDAGIY------TCAAENKAGKVEASV 424
             .|...:.|    ||.|| |::..|...|...|....|:....|      .||....|.....:.
  Rat   473 HSPAVGSITETLVQGDKTEYLLTALEPKSTYIICMVTMETGNTYVADETPVCAKAETADSYGPTT 537

  Fly   425 TLAVSRRP-PEAPWGVRIILLGAVAA--LLLVGGSSFAAIC--------LCSLQR------RRKL 472
            ||...:.. |.|...:..|:.||||.  |.||.|    |||        |.:.:|      |:|.
  Rat   538 TLNQEQNAGPMAGLPLAGIIGGAVALVFLFLVLG----AICWYVHRAGELLTRERVYNRGSRKKD 598

  Fly   473 RLWNS--------------------VPPVRRSESYEKIEMTARTRPDLGGGASCGGGSATGAGLF 517
            ....|                    :.|.|..|.|     ...|.....|.:.|.|....|.|..
  Rat   599 DYMESGTKKDNSILEIRGPGLQMLPINPYRSKEEY-----VVHTIFPSNGSSLCKGAHTIGYGTT 658

  Fly   518 HDAEEQG 524
            ....|.|
  Rat   659 RGYREGG 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kek3NP_001162986.1 LRR_RI <110..267 CDD:238064 56/232 (24%)
leucine-rich repeat 112..137 CDD:275380 10/73 (14%)
LRR_8 137..196 CDD:290566 22/61 (36%)
leucine-rich repeat 138..161 CDD:275380 7/25 (28%)
leucine-rich repeat 162..185 CDD:275380 9/22 (41%)
LRR_8 184..245 CDD:290566 24/84 (29%)
leucine-rich repeat 186..209 CDD:275380 10/24 (42%)
leucine-rich repeat 210..234 CDD:275380 9/45 (20%)
leucine-rich repeat 235..258 CDD:275380 8/22 (36%)
LRRCT 267..316 CDD:214507 14/52 (27%)
IG_like 328..428 CDD:214653 27/144 (19%)
Ig 335..425 CDD:143165 25/134 (19%)
Flrt1NP_001102630.1 PRK15370 <58..>329 CDD:185268 65/281 (23%)
leucine-rich repeat 108..128 CDD:275380 0/19 (0%)
leucine-rich repeat 129..152 CDD:275380 7/22 (32%)
leucine-rich repeat 153..178 CDD:275380 1/24 (4%)
leucine-rich repeat 179..199 CDD:275380 7/25 (28%)
leucine-rich repeat 200..223 CDD:275380 9/22 (41%)
leucine-rich repeat 224..249 CDD:275380 10/24 (42%)
leucine-rich repeat 250..271 CDD:275380 1/20 (5%)
leucine-rich repeat 272..295 CDD:275380 8/23 (35%)
leucine-rich repeat 296..319 CDD:275380 8/22 (36%)
PCC 300..>386 CDD:188093 23/88 (26%)
FN3 441..505 CDD:214495 11/63 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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