DRSC/TRiP Functional Genomics Resources

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Protein Alignment lace and LCB1

DIOPT Version :9

Sequence 1:NP_001285957.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001031796.1 Gene:LCB1 / 829800 AraportID:AT4G36480 Length:482 Species:Arabidopsis thaliana


Alignment Length:395 Identity:94/395 - (23%)
Similarity:178/395 - (45%) Gaps:51/395 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 LNLGSYNYLGFAAATGQCADDSEESARSSGLAYCSSRCELGDNEQLQELEALTARYFGVEDAIVF 280
            :|..|.||||..... :..:....:....|:..|..|...|..:...:.|...:::.|..|:|::
plant   112 VNFASANYLGLIGHE-KLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLGTPDSILY 175

  Fly   281 GMGFATNALNLPSLLGPNSLVISDEKNHASIILGLRLSGATTKVFKHNNMRDLERVLRQGVCYGN 345
            ..|.:|....:|.......::::||..|..|..||:||.:|...||||:|..|...|        
plant   176 SYGLSTMFSTIPCFCKKGDVIVADEGVHWGIQNGLQLSRSTIVYFKHNDMESLRITL-------- 232

  Fly   346 PKKGGQPWDKVM------------ILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEAHSVGAM 398
                    :|:|            |:.|.::...|.|..|.|::.||:||:..:.|||::|.|.:
plant   233 --------EKIMTKYKRSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVL 289

  Fly   399 GSRGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHAHCYAASISPPIAQ 463
            |..|||:.::.:|..:::|::......:..:.||:..|:.::||:.|.:|..:.::||:.|.:|.
plant   290 GRSGRGLAEHHSVPIEKIDVVTAAMGHALATEGGFCTGNARIIDYQRLSSSGYVFSASLPPYLAS 354

  Fly   464 QILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLAQL-GVITYGHEDSPVVPML--------- 518
            ..:|::..|      |.....:.:|.:|.....:.|:.: |:....:.:||:|.:.         
plant   355 AAITAIDVI------DQNPDMLVKLKQNVALLWKGLSDIKGMSLTSNRESPIVFLKLEKSSGSAK 413

  Fly   519 --VYLFSKIGAVVRTLTTRHIAAVGA--GFPATPIMEGRIRFCLSAAHTKEQLDFALEAIDEIAD 579
              :.|..|:..  |.|....:..|.:  .|.....:...|:..:||.|::..|..|.|::..:|.
plant   414 DDLLLLEKMAD--RALKEDSLLVVSSKRSFLDKCRLPVGIKLYVSAGHSESDLLKASESLKRLAS 476

  Fly   580 DLGLK 584
            :|.||
plant   477 ELLLK 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_001285957.1 PLN02483 117..587 CDD:178101 94/395 (24%)
BioF 164..577 CDD:223234 90/386 (23%)
LCB1NP_001031796.1 PLN02822 1..481 CDD:178417 92/393 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D438936at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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