DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lace and SPT1

DIOPT Version :10

Sequence 1:NP_476614.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_190447.1 Gene:SPT1 / 824039 AraportID:AT3G48780 Length:489 Species:Arabidopsis thaliana


Alignment Length:471 Identity:213/471 - (45%)
Similarity:299/471 - (63%) Gaps:6/471 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 VPLHTACLTYLGFYLLMILGYI---NQLLFVPKVATEKGRDGYVALYDAFESFYSRYVYRRIKDC 179
            :|..||..||..:.||...|.:   ::|:|  .........||..:..|.|.||.|.:|.||:||
plant     4 IPYLTAVSTYFSYGLLFAFGQLRDYSRLIF--DWWRTNNLQGYAPICLAHEDFYIRRLYHRIQDC 66

  Fly   180 WNRPICSVPGDELTLKDRVTDDYGWSFKFTGTETRCLNLGSYNYLGFAAATGQCADDSEESARSS 244
            :.|||.|.|...:.:.:||:||...:.|.|...:|||||||||||||.:....|.....||.:..
plant    67 FGRPISSAPDAWIDVVERVSDDNNKTLKRTTKTSRCLNLGSYNYLGFGSFDEYCTPRVIESLKKF 131

  Fly   245 GLAYCSSRCELGDNEQLQELEALTARYFGVEDAIVFGMGFATNALNLPSLLGPNSLVISDEKNHA 309
            ..:.||||.:.|......|||...|:|.|...|::||||:|||:..:|.|:|...|:|||..||.
plant   132 SASTCSSRVDAGTTSVHAELEDCVAKYVGQPAAVIFGMGYATNSAIIPVLIGKGGLIISDSLNHT 196

  Fly   310 SIILGLRLSGATTKVFKHNNMRDLERVLRQGVCYGNPKKGGQPWDKVMILVEGIFSMEGSIVRLP 374
            ||:.|.|.||||.:||:||....||:||::.:..|.|:. .:||.|::::||||:||||.|..||
plant   197 SIVNGARGSGATIRVFQHNTPGHLEKVLKEQIAEGQPRT-HRPWKKIIVVVEGIYSMEGEICHLP 260

  Fly   375 EVIALKKKYKAYLYLDEAHSVGAMGSRGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKK 439
            |::::.||||||:|||||||:||:|..||||.:...||..:|||:||||||||||.|||:||||.
plant   261 EIVSICKKYKAYVYLDEAHSIGAIGKTGRGVCELLGVDTSDVDIMMGTFTKSFGSCGGYIAGSKD 325

  Fly   440 LIDFLRTNSHAHCYAASISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLAQLGV 504
            ||.:|:....||.||.|||.|.|.||::::|.|:||||::.|.:|:.::..|:.:||..|.::|.
plant   326 LIQYLKHQCPAHLYATSISTPSATQIISAIKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGF 390

  Fly   505 ITYGHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAAVGAGFPATPIMEGRIRFCLSAAHTKEQLDF 569
            ...|..||||:|:::|..:||.|..|.....::|.|..||||||::..|.|.|:||:|::|.|..
plant   391 EVLGDNDSPVMPIMLYNPAKIPAFSRECLRENLAVVVVGFPATPLLLARARICISASHSREDLIK 455

  Fly   570 ALEAIDEIADDLGLKY 585
            ||:.|.:..|..|:||
plant   456 ALQVISKAGDLTGIKY 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_476614.1 AAT_I 117..587 CDD:450240 213/471 (45%)
SPT1NP_190447.1 PLN02483 1..489 CDD:178101 213/471 (45%)

Return to query results.
Submit another query.