DRSC/TRiP Functional Genomics Resources

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Protein Alignment lace and SPT1

DIOPT Version :9

Sequence 1:NP_001285957.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001325849.1 Gene:SPT1 / 824039 AraportID:AT3G48780 Length:489 Species:Arabidopsis thaliana


Alignment Length:471 Identity:213/471 - (45%)
Similarity:299/471 - (63%) Gaps:6/471 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 VPLHTACLTYLGFYLLMILGYI---NQLLFVPKVATEKGRDGYVALYDAFESFYSRYVYRRIKDC 179
            :|..||..||..:.||...|.:   ::|:|  .........||..:..|.|.||.|.:|.||:||
plant     4 IPYLTAVSTYFSYGLLFAFGQLRDYSRLIF--DWWRTNNLQGYAPICLAHEDFYIRRLYHRIQDC 66

  Fly   180 WNRPICSVPGDELTLKDRVTDDYGWSFKFTGTETRCLNLGSYNYLGFAAATGQCADDSEESARSS 244
            :.|||.|.|...:.:.:||:||...:.|.|...:|||||||||||||.:....|.....||.:..
plant    67 FGRPISSAPDAWIDVVERVSDDNNKTLKRTTKTSRCLNLGSYNYLGFGSFDEYCTPRVIESLKKF 131

  Fly   245 GLAYCSSRCELGDNEQLQELEALTARYFGVEDAIVFGMGFATNALNLPSLLGPNSLVISDEKNHA 309
            ..:.||||.:.|......|||...|:|.|...|::||||:|||:..:|.|:|...|:|||..||.
plant   132 SASTCSSRVDAGTTSVHAELEDCVAKYVGQPAAVIFGMGYATNSAIIPVLIGKGGLIISDSLNHT 196

  Fly   310 SIILGLRLSGATTKVFKHNNMRDLERVLRQGVCYGNPKKGGQPWDKVMILVEGIFSMEGSIVRLP 374
            ||:.|.|.||||.:||:||....||:||::.:..|.|:. .:||.|::::||||:||||.|..||
plant   197 SIVNGARGSGATIRVFQHNTPGHLEKVLKEQIAEGQPRT-HRPWKKIIVVVEGIYSMEGEICHLP 260

  Fly   375 EVIALKKKYKAYLYLDEAHSVGAMGSRGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKK 439
            |::::.||||||:|||||||:||:|..||||.:...||..:|||:||||||||||.|||:||||.
plant   261 EIVSICKKYKAYVYLDEAHSIGAIGKTGRGVCELLGVDTSDVDIMMGTFTKSFGSCGGYIAGSKD 325

  Fly   440 LIDFLRTNSHAHCYAASISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLAQLGV 504
            ||.:|:....||.||.|||.|.|.||::::|.|:||||::.|.:|:.::..|:.:||..|.::|.
plant   326 LIQYLKHQCPAHLYATSISTPSATQIISAIKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGF 390

  Fly   505 ITYGHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAAVGAGFPATPIMEGRIRFCLSAAHTKEQLDF 569
            ...|..||||:|:::|..:||.|..|.....::|.|..||||||::..|.|.|:||:|::|.|..
plant   391 EVLGDNDSPVMPIMLYNPAKIPAFSRECLRENLAVVVVGFPATPLLLARARICISASHSREDLIK 455

  Fly   570 ALEAIDEIADDLGLKY 585
            ||:.|.:..|..|:||
plant   456 ALQVISKAGDLTGIKY 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_001285957.1 PLN02483 117..587 CDD:178101 213/471 (45%)
BioF 164..577 CDD:223234 196/412 (48%)
SPT1NP_001325849.1 PLN02483 1..489 CDD:178101 213/471 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 356 1.000 Domainoid score I202
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21610
Inparanoid 1 1.050 411 1.000 Inparanoid score I453
OMA 1 1.010 - - QHG53569
OrthoDB 1 1.010 - - D438936at2759
OrthoFinder 1 1.000 - - FOG0001517
OrthoInspector 1 1.000 - - otm3235
orthoMCL 1 0.900 - - OOG6_100700
Panther 1 1.100 - - LDO PTHR13693
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X956
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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