DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lace and alas1

DIOPT Version :9

Sequence 1:NP_001285957.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_958444.1 Gene:alas1 / 64608 ZFINID:ZDB-GENE-001229-2 Length:613 Species:Danio rerio


Alignment Length:602 Identity:150/602 - (24%)
Similarity:258/602 - (42%) Gaps:95/602 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DLSAPEKQELLRKF--SAPAYTEIRTRRCQPKPANDAQSPSSINYHPEKKSIPNGHAS------I 89
            ||::   :.|||..  |:.::.::.........|:||  |:....||   :.|.||||      :
Zfish    37 DLAS---RPLLRPLCSSSASFQKVEDSSSAGHEASDA--PAVPAGHP---APPAGHASASKCPFL 93

  Fly    90 LDQESKPN-----QAEGKLSPELEHFQKTSFEEVPLHTACLTYL-----GFYLLMIL-----GYI 139
            ..:.|:.|     ||...|..::...:..   :..:..:.||.|     |..|:..|     .::
Zfish    94 AAEMSQKNSGVVRQASMALQEDVSEVRTV---QKDVSASALTPLKDGMNGGNLMKKLMKQRPAHV 155

  Fly   140 NQLL--FVPK-VATEKGRDGYVALYDAF-----ESFYSRYVYRRIKDCWNRPICSVPGDELTLKD 196
            :.||  .:|| |::.:        ||.|     |...|.:.||..|.. ||.....|        
Zfish   156 SHLLQDNMPKNVSSFR--------YDEFFEKKIEEKKSDHTYRVFKTV-NRRATEFP-------- 203

  Fly   197 RVTDDYGWSFKF-TGTETRCLNLGSYNYLGFAAATGQCADDSEESARSSGLAYCSSRCELGDNEQ 260
             :.|||..|..| ......|.|    :|||.:... :......::....|.....:|...|.::.
Zfish   204 -MADDYTESLSFKRNVSVWCSN----DYLGMSRHP-RVVQTIMDTLGKHGSGAGGTRNISGTSKF 262

  Fly   261 LQELEALTARYFGVEDAIVFGMGFATNALNLPSL--LGPNSLVISDEKNHASIILGLRLSGATTK 323
            ..:||...|...|.:.|::|...|..|...|.:|  :.|...:.||..||||:|.|:|.|||...
Zfish   263 HVDLEHELADLHGKDAALLFTSCFVANDSTLFTLAKMMPGCEIYSDAGNHASMIQGIRNSGAKKF 327

  Fly   324 VFKHNNMRDLERVLRQGVCYGNPKKGGQPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLY 388
            :|:||:.:.|..:|.:          ..|....::..|.:.||:|::..|.::..:..::.|..:
Zfish   328 IFRHNDAKHLRELLEK----------SDPSTPKIVAFETVHSMDGAVCPLEQLCDVAHEFGAVTF 382

  Fly   389 LDEAHSVGAMGSRGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHAHCY 453
            :||.|:||..|.||.|:.|..:|..| :||:.||..|:||..|||:|.:..|:|.:|:.:....:
Zfish   383 VDEVHAVGLYGPRGGGIGDRDSVMHK-MDIISGTLGKAFGCVGGYIASTHALVDTVRSYAAGFIF 446

  Fly   454 AASISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLAQLGVITYGHEDSPVVPML 518
            ..|:.|.:......|::.:..|:|..:.||  ||  ||....|:.|...|:... |..|.::|:.
Zfish   447 TTSLPPMLLSGARQSVQILKSEEGRTLRRK--HQ--RNVTLLRQMLMDSGLPVI-HCPSHIIPVR 506

  Fly   519 VYLFSKIGAVVRTLTTRHIAAVGA-GFPATPIMEGRIRFCLSAAHTKEQLDFALEAIDEIADDLG 582
            |....|...|...:.:|:...|.| .:|.....|..:|...:..||.:.:.:.::.:.:...::|
Zfish   507 VADAEKNTEVCDIMMSRYNIYVQAINYPTVARGEELLRIAPTPHHTPQMMKYFVDKLTQTWTEVG 571

  Fly   583 L----------KYSRKP 589
            |          .:.|:|
Zfish   572 LPLKPHSSAECNFCRQP 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_001285957.1 PLN02483 117..587 CDD:178101 126/501 (25%)
BioF 164..577 CDD:223234 111/421 (26%)
alas1NP_958444.1 Preseq_ALAS 4..120 CDD:286162 22/90 (24%)
AAT_I 170..575 CDD:302748 115/443 (26%)
BioF 170..567 CDD:223234 113/435 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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