DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lace and alas2

DIOPT Version :9

Sequence 1:NP_001285957.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_571757.1 Gene:alas2 / 64607 ZFINID:ZDB-GENE-001229-1 Length:583 Species:Danio rerio


Alignment Length:454 Identity:122/454 - (26%)
Similarity:203/454 - (44%) Gaps:54/454 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 ALYDAFESFYSRYVYRRIKDCWNRPICSVPGDEL-------TLKD------RVTDDYGWSFKFTG 210
            :|:...:|..|......::|.:|||..|.  ||.       ..||      :..:.:...|.|..
Zfish   112 SLFSGLQSHQSTGPTHLLQDNFNRPTFSY--DEFFTQKIVEKKKDHTYRIFKTVNRFAEVFPFAE 174

  Fly   211 TETRCLNLGSY-------NYLGFA------AATGQCADDSEESARSSGLAYCSSRCELGDNEQLQ 262
            ..:....|||.       :|||.:      .|.|       ::.:..|.....:|...|.:....
Zfish   175 DYSIAGRLGSQVSVWCSNDYLGMSRHPRVVKAIG-------DALKKHGAGAGGTRNISGTSNYHV 232

  Fly   263 ELEALTARYFGVEDAIVFGMGFATNALNLPSL--LGPNSLVISDEKNHASIILGLRLSGATTKVF 325
            .||...||....:.|:||...|..|...|.:|  :.|...:.||..||||:|.|:|.|||...:|
Zfish   233 ALENELARLHQKDGALVFSSCFVANDSTLFTLAKMLPGCEIYSDMGNHASMIQGIRNSGAKRFIF 297

  Fly   326 KHNNMRDLERVLRQGVCYGNPKKGGQPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLD 390
            :||:...||.:|.:          ..|....::..|.:.||:|:|..|.|:..:..||.|..::|
Zfish   298 RHNDASHLEELLSR----------SDPLTPKIVAFETVHSMDGAICPLEELCDVAHKYGALTFVD 352

  Fly   391 EAHSVGAMGSRGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHAHCYAA 455
            |.|:||..|:.|.||.:..||..| :||:.||..|:||..|||:|.:..|:|.:|:.:....:..
Zfish   353 EVHAVGLYGAHGAGVGERDNVMHK-IDIVSGTLGKAFGCVGGYIASTAALVDTVRSFAAGFIFTT 416

  Fly   456 SISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLAQLGVITYGHEDSPVVPMLVY 520
            |:.|.:....|.|::.:..::|..:  ::.||  ||.::.|:.|...| :...:..|.::|:.|.
Zfish   417 SLPPMVLAGALESVRVLKSDEGQAL--RRAHQ--RNVKHMRQLLLDAG-LPVVNCPSHIIPIRVG 476

  Fly   521 LFSKIGAVVRTLTTRHIAAVGA-GFPATPIMEGRIRFCLSAAHTKEQLDFALEAIDEIADDLGL 583
            ..:|...|...|..:|...|.| .:|..|..|..:|...|..|....:::..|.:.::..::||
Zfish   477 NAAKNSEVCDILLEKHNIYVQAINYPTVPRGEELLRLAPSPFHNPIMMNYFAEKLLDVWQEVGL 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_001285957.1 PLN02483 117..587 CDD:178101 122/454 (27%)
BioF 164..577 CDD:223234 119/441 (27%)
alas2NP_571757.1 Preseq_ALAS 3..98 CDD:286162
AAT_I 138..542 CDD:302748 115/428 (27%)
BioF 138..535 CDD:223234 113/421 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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