DRSC/TRiP Functional Genomics Resources

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Protein Alignment lace and Gcat

DIOPT Version :9

Sequence 1:NP_001285957.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001019448.1 Gene:Gcat / 366959 RGDID:1307291 Length:416 Species:Rattus norvegicus


Alignment Length:442 Identity:121/442 - (27%)
Similarity:196/442 - (44%) Gaps:46/442 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 FVPKVATEKGRDGYVALYDAFESFYSRYVYRRIKDCWNRPICSVPGDELTLKDRV-TDDYGWSFK 207
            |:.:.|...||..:.||             .:::...:|.:..:.|......:|| |...|...:
  Rat     5 FLWRAALSPGRRAHSAL-------------AQLRCVLDRELEGIRGAGTWKSERVITSRQGPCIR 56

  Fly   208 FTGTETRCLNLGSYNYLGFAAATGQCADDSEESARSSGLAYCSSRCELGDNEQLQELEALTARYF 272
            ..|.....||..:.||||.::.. :......::....|....|:|...|.....:.|||..||:.
  Rat    57 VEGISGGILNFCANNYLGLSSHP-EVIQAGLQALEEFGAGLISTRFICGTQSIHKNLEAKIARFH 120

  Fly   273 GVEDAIVFGMGFATNALNLPSLLGPNSLVISDEKNHASIILGLRLSGATTKVFKHNNMRDLERVL 337
            ..||||::...|..|.....:||.|...|:|||.||||:|.|:||..|....::|.:|.|||..|
  Rat   121 QREDAILYPSCFDANTGLFEALLTPEDAVLSDELNHASVIDGIRLCKAHKYRYRHLDMADLEAKL 185

  Fly   338 RQGVCYGNPKKGGQPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEAHSVGAMGSRG 402
            ::          .|.....::..:|.|||:|.:..|.|:..|..:|.|.:::||.|:.|.:|..|
  Rat   186 KE----------AQKHRLRLVATDGAFSMDGDVAPLQEICRLAAQYGALVFVDECHATGFLGPTG 240

  Fly   403 RGVTDYFNVDPKEVDILMGTFTKSFGSA-GGYLAGSKKLIDFLRTNSHAHCYAASISPPI----- 461
            ||..:...| ..:|.|:..|..|:.|.| |||..|.:.||..:|..|..:.::.|:.|.:     
  Rat   241 RGTDELLGV-MDQVTIINSTLGKALGGASGGYTTGPEPLISLMRQRSRPYLFSNSLPPAVVGCAS 304

  Fly   462 -AQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLAQLGVITYGHEDSPVVPMLVYLFSKI 525
             |..:|....||            :..:|..||.||.::...| .|....|.|:.|:::......
  Rat   305 KALDLLMESNTI------------VQSMAAKTRRFRSKMEAAG-FTISGADHPICPVMLGDARLS 356

  Fly   526 GAVVRTLTTRHIAAVGAGFPATPIMEGRIRFCLSAAHTKEQLDFALEAIDEI 577
            ..:...:..:.|..:|..:|..|..:.|||..:||.|::|.:|..:||..|:
  Rat   357 SQMAEDMLKKGIFVIGFSYPVVPKGKARIRVQISAVHSEEDIDRCVEAFVEV 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_001285957.1 PLN02483 117..587 CDD:178101 121/442 (27%)
BioF 164..577 CDD:223234 114/420 (27%)
GcatNP_001019448.1 AAT_I 24..415 CDD:302748 115/410 (28%)
BioF 28..409 CDD:223234 115/406 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D312139at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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