DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lace and Sptlc1

DIOPT Version :10

Sequence 1:NP_476614.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001101876.1 Gene:Sptlc1 / 361213 RGDID:1307140 Length:473 Species:Rattus norvegicus


Alignment Length:396 Identity:104/396 - (26%)
Similarity:177/396 - (44%) Gaps:59/396 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 CLNLGSYNYLGF-------AAATGQCADDSEESARSSGLAYCSSRCELGDNEQLQELEALTARYF 272
            |:|..|:|:||.       |||..        |.:..|:..|..|...|..:...:||...|::.
  Rat   100 CVNFASFNFLGLLANPRVKAAAFA--------SLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFM 156

  Fly   273 GVEDAIVFGMGFATNALNLPSLLGPNSLVISDEKNHASIILGLRLSGATTKVFKHNNMRDLERVL 337
            ..|:||::..||:|.|..:|:......:|..|.....:|..||:.|.:..|:||||::.||||:|
  Rat   157 KTEEAIIYSYGFSTIASAIPAYSKRGDIVFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLL 221

  Fly   338 RQGVC--YGNPKKGGQPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEAHSVGAMGS 400
            ::...  ..||:|...  .:..|:.||::...|:|..|||::.||.||||.::|:|:.|.|.:|.
  Rat   222 KEQEIEDQKNPRKARV--TRRFIVAEGLYMNTGTICPLPELVRLKYKYKARIFLEESLSFGVLGE 284

  Fly   401 RGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHAHCYAASISPPIAQQI 465
            .|||||:::.:...::|::......:..|.||:..|...::|..|.:...:|::||:.|.:|...
  Rat   285 HGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAA 349

  Fly   466 LTSMKTIMGEDGTDIGRKK----IHQLARNTRYFRRRLAQLGVITYGHEDSPVVPMLVYLFSKIG 526
            :.::..:....|.....||    ||:..:...         |:...|....|.:.:  .|....|
  Rat   350 IEALNIMEENPGIFAVLKKKCQTIHKSLQGVS---------GLKVVGESLCPALHL--QLEESTG 403

  Fly   527 A----------VVRTLTTRHIAAVGAGF---------PATPIMEGRIRFCLSAAHTKEQLDFALE 572
            :          :|.....:.||...|.:         |.:      ||..::...|.|:|..|..
  Rat   404 SRERDMKLLQEIVEQCMNKGIALTQARYLDKEEKCLPPPS------IRVVVTVEQTDEELQRAAA 462

  Fly   573 AIDEIA 578
            .|.|.|
  Rat   463 TIREAA 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_476614.1 AAT_I 117..587 CDD:450240 104/396 (26%)
Sptlc1NP_001101876.1 Interaction with SPTLC2. /evidence=ECO:0000250|UniProtKB:O15269 1..66
AAT_I 11..472 CDD:450240 104/396 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.