DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lace and Sptlc3

DIOPT Version :9

Sequence 1:NP_001285957.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001099987.1 Gene:Sptlc3 / 296188 RGDID:1310030 Length:563 Species:Rattus norvegicus


Alignment Length:545 Identity:233/545 - (42%)
Similarity:355/545 - (65%) Gaps:27/545 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 HPEKKSIPNGHASILDQESKPNQAEGK------LSPELEHFQKTS---------FEEVPLHTACL 125
            :|...::.||  ::.:.:::|.:.:..      :|.|.:..:|..         :.|.||:....
  Rat     3 NPRDSAVTNG--TLRNPKTQPGKRQSTDCVKNGISKEAQQNRKAEEDDKLVFKPYPEPPLYVFVF 65

  Fly   126 TYLGFYLLMILGYINQLL---FVPK----VATEKGRDGYVALYDAFESFYSRYVYRRIKDCWNRP 183
            ||:|:.:.|:.||:...:   .:.|    |..|:.:| :|.||..||:||:|.:|.||:|.|:..
  Rat    66 TYMGYGIGMLFGYLRDFMRNWGIEKCNAAVEREEQKD-FVPLYQDFENFYTRNLYMRIRDSWSHT 129

  Fly   184 ICSVPGDELTLKDRVTDDYGWSFKFTGTETR-CLNLGSYNYLGFAAATGQCADDSEESARSSGLA 247
            :||||.....:.::|||||.|:|:.||...: .:|:.||||||.|:...:..:..:::....|:.
  Rat   130 VCSVPVPNFDIMEKVTDDYNWTFRHTGKVIKNVINMASYNYLGLASKYNESMEKVKDTIEKYGVG 194

  Fly   248 YCSSRCELGDNEQLQELEALTARYFGVEDAIVFGMGFATNALNLPSLLGPNSLVISDEKNHASII 312
            ..|:|.|:|..:...|||.|.|::..||..:|||||||||:.|:|..:|...|::|||.||.|:|
  Rat   195 VASTRNEMGSLDIHNELEDLMAKFLNVEAVMVFGMGFATNSTNIPIFVGKGCLILSDEFNHTSVI 259

  Fly   313 LGLRLSGATTKVFKHNNMRDLERVLRQGVCYGNPKKGGQPWDKVMILVEGIFSMEGSIVRLPEVI 377
            ||.|||||..:.|||||:::||::||:.:..|.|:. |:.|.|::|||||::|||||||.||:::
  Rat   260 LGSRLSGAVIRPFKHNNIQNLEKLLREAIIRGQPRT-GRAWKKILILVEGVYSMEGSIVNLPQIV 323

  Fly   378 ALKKKYKAYLYLDEAHSVGAMGSRGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLID 442
            |||||||||||:|||||:|..|:.|:|:.:.|.:.|:::||.||||||||.::|||:||.|:::|
  Rat   324 ALKKKYKAYLYMDEAHSIGCTGTMGQGIRELFGLAPEDIDIYMGTFTKSFAASGGYIAGKKEIVD 388

  Fly   443 FLRTNSHAHCYAASISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLAQLGVITY 507
            ::|..||:..||.|:||.:|.||:.|:|.:||.:|...|.::|.||..|.:||||||.::|.|.|
  Rat   389 YVRVQSHSATYATSMSPVVAAQIIRSLKIMMGYEGNFGGVQRIQQLRENIKYFRRRLIEMGFIIY 453

  Fly   508 GHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAAVGAGFPATPIMEGRIRFCLSAAHTKEQLDFALE 572
            |::.|||||:|:|:.:|:.|..|.|..:.||.|..|||||.:.|||.||.||:|||:|.||..||
  Rat   454 GNDYSPVVPVLLYMPAKVSAFGRLLLKKKIAVVVVGFPATSLPEGRARFSLSSAHTREMLDTVLE 518

  Fly   573 AIDEIADDLGLKYSRKPRDPNPVIY 597
            .:|:|.|.|.:||....:....|:|
  Rat   519 VVDKIGDLLNVKYFPYKKSGRAVLY 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_001285957.1 PLN02483 117..587 CDD:178101 224/477 (47%)
BioF 164..577 CDD:223234 203/413 (49%)
Sptlc3NP_001099987.1 PLN02483 59..533 CDD:178101 223/475 (47%)
bioF 160..521 CDD:273303 179/361 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 470 1.000 Domainoid score I429
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 574 1.000 Inparanoid score I1013
OMA 1 1.010 - - QHG53569
OrthoDB 1 1.010 - - D312139at33208
OrthoFinder 1 1.000 - - FOG0001517
OrthoInspector 1 1.000 - - otm44570
orthoMCL 1 0.900 - - OOG6_100700
Panther 1 1.100 - - O PTHR13693
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X956
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.