DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lace and Sptlc1

DIOPT Version :9

Sequence 1:NP_001285957.1 Gene:lace / 34910 FlyBaseID:FBgn0002524 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_033295.2 Gene:Sptlc1 / 268656 MGIID:1099431 Length:473 Species:Mus musculus


Alignment Length:393 Identity:106/393 - (26%)
Similarity:185/393 - (47%) Gaps:53/393 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 CLNLGSYNYLGFAA-----ATGQCADDSEESARSSGLAYCSSRCELGDNEQLQELEALTARYFGV 274
            |:|..|:|:||..|     ||      :..|.:..|:..|..|...|..:...:||...|::...
Mouse   100 CVNFASFNFLGLLANPRVKAT------AFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKT 158

  Fly   275 EDAIVFGMGFATNALNLPSLLGPNSLVISDEKNHASIILGLRLSGATTKVFKHNNMRDLERVLRQ 339
            |:||::..||:|.|..:|:......::..|.....:|..||:.|.:..|:||||::.||||:|::
Mouse   159 EEAIIYSYGFSTIASAIPAYSKRGDIIFVDSAACFAIQKGLQASRSDIKLFKHNDVADLERLLKE 223

  Fly   340 GVC--YGNPKKGGQPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEAHSVGAMGSRG 402
            ...  ..||:|...  .:..|:|||::...|:|..|||::.||.||||.::|:|:.|.|.:|..|
Mouse   224 QEIEDQKNPRKARV--TRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHG 286

  Fly   403 RGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHAHCYAASISPPIAQQILT 467
            ||||:::.:...::|::......:..|.||:..|...::|..|.:...:|::||:.|.:|...:.
Mouse   287 RGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAIE 351

  Fly   468 SMKTIMGEDGTDIG---RKKIHQLARNTRYFRRRLAQLGVITYGHEDSPVVPMLVYLFSKIG--- 526
            ::..:  |:..||.   :||...:.::.:      ...|:...|...||.:.:  .|....|   
Mouse   352 ALNIM--EENPDIFAVLKKKCQNIHKSLQ------GVSGLKVVGESLSPALHL--QLEESTGSRE 406

  Fly   527 -------AVVRTLTTRHIAAVGAGF---------PATPIMEGRIRFCLSAAHTKEQLDFALEAID 575
                   |:|.....:.||...|.:         |.:      ||..::...|:|:|..|...|.
Mouse   407 KDVKLLQAIVDQCMDKGIALTQARYLDKEEKCLPPPS------IRVVVTVEQTEEELQRAASTIR 465

  Fly   576 EIA 578
            |.|
Mouse   466 EAA 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
laceNP_001285957.1 PLN02483 117..587 CDD:178101 106/393 (27%)
BioF 164..577 CDD:223234 104/390 (27%)
Sptlc1NP_033295.2 AAT_I 11..472 CDD:302748 106/393 (27%)
BioF 81..467 CDD:223234 104/390 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D312139at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.