DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and scrt1b

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001014369.1 Gene:scrt1b / 541533 ZFINID:ZDB-GENE-050327-72 Length:279 Species:Danio rerio


Alignment Length:234 Identity:96/234 - (41%)
Similarity:120/234 - (51%) Gaps:28/234 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 PSPASSMASPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASV 216
            |||.....|..|.|.......|.||.|::.:|....|.:|.....:.|.|               
Zfish    61 PSPGPIYDSNHSDYGAPDSDQPDSPQSEITSGYINGDNAVSEGYTVDAFF--------------- 110

  Fly   217 SSSSGYSYTPAMSASSASVAANHAKNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHS 281
             .:.|.|....:|.|...        .|..|:||.|.|:||..||:|:|.|    .....|....
Zfish   111 -ITDGRSRRKVISGSRTL--------QRHTCNECGKTYATSSNLSRHKQTH----RSLDSKMAKK 162

  Fly   282 CEECGKLYTTIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADR 346
            |..|||:|.::.|:.||:.||.|..||.|||||||||||||||:|:|||||||.|..|.::||||
Zfish   163 CPTCGKVYVSMPAMAMHLLTHDLKHKCDICGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADR 227

  Fly   347 SNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNC 385
            ||||||.|||...|.:.|:.|:|:|...|.||||..|.|
Zfish   228 SNLRAHMQTHSAFKHFKCKRCNKTFVLKSYLNKHYESAC 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 17/19 (89%)
zf-H2C2_2 321..344 CDD:290200 14/22 (64%)
zf-C2H2 334..356 CDD:278523 14/21 (67%)
C2H2 Zn finger 336..356 CDD:275368 13/19 (68%)
zf-H2C2_2 348..373 CDD:290200 13/24 (54%)
C2H2 Zn finger 364..380 CDD:275368 7/15 (47%)
C2H2 Zn finger 247..267 CDD:275368 11/19 (58%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-C2H2 306..328 CDD:278523 18/21 (86%)
COG5048 307..>356 CDD:227381 38/48 (79%)
scrt1bNP_001014369.1 zf-C2H2 130..152 CDD:278523 11/21 (52%)
C2H2 Zn finger 132..152 CDD:275368 11/19 (58%)
C2H2 Zn finger 163..180 CDD:275371 7/16 (44%)
COG5048 187..>263 CDD:227381 50/75 (67%)
zf-C2H2 187..209 CDD:278523 18/21 (86%)
C2H2 Zn finger 189..209 CDD:275368 17/19 (89%)
C2H2 Zn finger 217..237 CDD:275368 13/19 (68%)
zf-C2H2 217..237 CDD:278523 13/19 (68%)
zf-H2C2_2 229..253 CDD:290200 12/23 (52%)
C2H2 Zn finger 245..261 CDD:275368 7/15 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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