DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and wdn

DIOPT Version :10

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_476900.1 Gene:wdn / 43398 FlyBaseID:FBgn0005642 Length:869 Species:Drosophila melanogaster


Alignment Length:447 Identity:101/447 - (22%)
Similarity:171/447 - (38%) Gaps:115/447 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RLPQTEALALTKDSQFAQDQP-----QDLSLKRGRDEETQDYQQ---PEPKRDYVLNLSKTPERN 77
            |:...::::..||.....|..     ...||..|....:.|:.:   ...:.:..||||....|:
  Fly    46 RINNFDSISSIKDESLDIDLSACVTISSASLVNGNSLSSTDFWRVLDESAQNNTELNLSSDVCRD 110

  Fly    78 SSSSSNSCLLSPPVEAQDYLPTEIHMRGLT------------AGTTGYTTATPTTINPFQSAFVM 130
            ..::::|..:...:.:.::..:|..:..|.            ..|:...|:||..::|.|     
  Fly   111 DLAATSSSTVPSTLTSDNHSSSEFSVTFLRPEPPNAFTNSPFKKTSSSGTSTPVKLSPEQ----- 170

  Fly   131 AAGCNPISALWSSYQPHLAAFPSPASSMASPQSVYSYQQMTPPSSPGSDLETGSE--------PE 187
                        .:|.|         .:..|||....::...|::....|:...|        ||
  Fly   171 ------------LHQQH---------QLQMPQSQLLQRKPKLPAATAVRLKVFKEEPPEEKHPPE 214

  Fly   188 DLSVRNDI----PLPALFHLFDEAKSSSSGASVSS--SSGYSYTPAMSASSASV----------- 235
            .:..:.::    .||..|.:|.:|||:.|.|..:|  ....|.|..:....|.:           
  Fly   215 QVVTKVEVCESELLPPSFTIFQQAKSAESVADAASMPPPAASETKPLEVDPAPLHKCLDCNGLLL 279

  Fly   236 ----------AANHAKNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYT 290
                      ||.|.....::|.|||:.:....||.||.:.|......:..||   |.:|||. .
  Fly   280 ETPDEVAKHEAAAHRLRLTYRCSECQREFELLAGLKKHLKTHRTEGRKDTWKK---CPDCGKC-L 340

  Fly   291 TIGALKMHIRTHT--LPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQ 353
            .:|::.||.:.|:  ...:|.|||:.|.:...|..|.|.|:.|||::||:|.:.|.:||:|:.||
  Fly   341 KLGSMWMHRKIHSDNKKYQCDICGQKFVQKINLTHHARIHSSEKPYECPECQKRFQERSHLQRHQ 405

  Fly   354 QTHVDVKKY----------------------------ACQVCHKSFSRMSLLNKHSS 382
            :.|...:.|                            ||.||.|||...|.|.:||:
  Fly   406 KYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACTVCDKSFISNSKLKQHSN 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 SFP1 <245..303 CDD:227516 18/57 (32%)
C2H2 Zn finger 247..267 CDD:275368 8/19 (42%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-C2H2 306..328 CDD:395048 8/21 (38%)
C2H2 Zn finger 308..328 CDD:275368 8/19 (42%)
zf-H2C2_2 321..344 CDD:463886 10/22 (45%)
zf-C2H2 334..356 CDD:395048 9/21 (43%)
C2H2 Zn finger 336..356 CDD:275368 9/19 (47%)
zf-H2C2_2 348..373 CDD:463886 12/52 (23%)
C2H2 Zn finger 364..380 CDD:275368 8/15 (53%)
wdnNP_476900.1 zf-C2HE <279..321 CDD:465082 11/41 (27%)
C2H2 Zn finger 301..321 CDD:275368 8/19 (42%)
C2H2 Zn finger 333..352 CDD:275368 7/19 (37%)
zf-C2H2 358..380 CDD:395048 8/21 (38%)
C2H2 Zn finger 360..380 CDD:275368 8/19 (42%)
zf-H2C2_2 376..395 CDD:463886 9/18 (50%)
zf-C2H2 386..408 CDD:395048 9/21 (43%)
C2H2 Zn finger 388..436 CDD:275368 11/47 (23%)
zf-H2C2_2 400..425 CDD:463886 5/24 (21%)
C2H2 Zn finger 416..433 CDD:275368 0/16 (0%)
SUF4-like 440..>507 CDD:411020 11/23 (48%)
C2H2 Zn finger 444..465 CDD:411020 10/19 (53%)
C2H2 Zn finger 444..464 CDD:275368 10/19 (53%)
zf-H2C2_2 457..481 CDD:463886 3/6 (50%)
C2H2 Zn finger 472..493 CDD:411020
C2H2 Zn finger 472..493 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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