DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sna and ouib

DIOPT Version :10

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_649822.2 Gene:ouib / 41039 FlyBaseID:FBgn0037618 Length:312 Species:Drosophila melanogaster


Alignment Length:141 Identity:43/141 - (30%)
Similarity:70/141 - (49%) Gaps:16/141 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 ASSASVAANHAKNYR----FKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYT 290
            |:|......|.:.:|    |.|.:|...:.::..|..|.:.|       ..::..:|..|.|.|.
  Fly   176 ATSKPTFQRHMRKHRGERPFGCKDCDARFLSAGELRAHHRVH-------TGEQPFACRFCEKRYV 233

  Fly   291 TIGALKMHIRTHT--LPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQ 353
            :.....:|.||||  .|..|..|||.|:..::|:.|:..||||:.|:|..|.|||..:::|..|.
  Fly   234 SYMGRLIHERTHTNDRPYVCEECGKKFTTAYVLKNHMVIHTGERNFRCDICDRSFQRKAHLVTHT 298

  Fly   354 QT--HV-DVKK 361
            ::  |: :|||
  Fly   299 RSMMHLQNVKK 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 SFP1 <245..303 CDD:227516 13/57 (23%)
C2H2 Zn finger 247..267 CDD:275368 4/19 (21%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-C2H2 306..328 CDD:395048 7/21 (33%)
C2H2 Zn finger 308..328 CDD:275368 7/19 (37%)
zf-H2C2_2 321..344 CDD:463886 11/22 (50%)
zf-C2H2 334..356 CDD:395048 8/23 (35%)
C2H2 Zn finger 336..356 CDD:275368 7/21 (33%)
zf-H2C2_2 348..373 CDD:463886 6/17 (35%)
C2H2 Zn finger 364..380 CDD:275368
ouibNP_649822.2 zf-AD 5..78 CDD:214871
C2H2 Zn finger 169..189 CDD:275368 3/12 (25%)
zf-H2C2_2 182..206 CDD:463886 5/23 (22%)
C2H2 Zn finger 197..217 CDD:275368 4/19 (21%)
SFP1 <219..269 CDD:227516 16/49 (33%)
C2H2 Zn finger 225..245 CDD:275368 6/19 (32%)
C2H2 Zn finger 253..273 CDD:275368 7/19 (37%)
zf-H2C2_2 266..288 CDD:463886 10/21 (48%)
C2H2 Zn finger 281..299 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.