DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and hkb

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_524221.1 Gene:hkb / 40549 FlyBaseID:FBgn0261434 Length:297 Species:Drosophila melanogaster


Alignment Length:291 Identity:75/291 - (25%)
Similarity:113/291 - (38%) Gaps:101/291 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 ASSMASPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFH----LFDEAKSSSSGAS 215
            |::.|:|::|                  ..|||.::::.::...:..|    .|..|.||:|.:|
  Fly    25 AATSAAPRTV------------------KQEPEAITIKTELASSSFGHDCDGDFSSASSSASSSS 71

  Fly   216 VSSSSGY-------SYT------------PAMS-----------ASSASVAA--NHAKNYRFKCD 248
            .||.|.|       |||            |..|           |::||:|.  .||.......|
  Fly    72 NSSKSCYEEALNHSSYTRTSTPLLDAAPHPVFSHPQSSPLDTHAAATASLAPPNQHAPFLSAASD 136

  Fly   249 ECQKMY-----------ST------------SMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYT 290
                :|           ||            :|||.: :::....||..|.|..:|.::..|.: 
  Fly   137 ----LYYAAAAAAAAAASTPTAVPGFGMDPFTMGLME-QEYARVMAEDAQLKALNSRKQRPKKF- 195

  Fly   291 TIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCP--DCPRSFADRSNLRAHQ 353
                            |||.|..|||....|:||||.||||:||:|.  .|.::|.....|..|:
  Fly   196 ----------------KCPNCDVAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRNEELTRHK 244

  Fly   354 QTHVDVKKYACQVCHKSFSRMSLLNKHSSSN 384
            :.|..::.|.|..|.|.|.|...|.||..::
  Fly   245 RIHTGLRPYPCSACGKKFGRRDHLKKHMKTH 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 11/19 (58%)
zf-H2C2_2 321..344 CDD:290200 13/24 (54%)
zf-C2H2 334..356 CDD:278523 6/23 (26%)
C2H2 Zn finger 336..356 CDD:275368 5/21 (24%)
zf-H2C2_2 348..373 CDD:290200 8/24 (33%)
C2H2 Zn finger 364..380 CDD:275368 6/15 (40%)
C2H2 Zn finger 247..267 CDD:275368 7/42 (17%)
C2H2 Zn finger 282..302 CDD:275368 1/19 (5%)
zf-C2H2 306..328 CDD:278523 12/21 (57%)
COG5048 307..>356 CDD:227381 23/50 (46%)
hkbNP_524221.1 COG5048 195..>261 CDD:227381 27/82 (33%)
zf-C2H2 195..217 CDD:278523 12/38 (32%)
C2H2 Zn finger 197..217 CDD:275368 11/19 (58%)
zf-H2C2_2 210..236 CDD:290200 14/25 (56%)
C2H2 Zn finger 225..247 CDD:275368 5/21 (24%)
zf-H2C2_2 239..264 CDD:290200 8/24 (33%)
C2H2 Zn finger 255..275 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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