DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and CG7386

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_648036.1 Gene:CG7386 / 38719 FlyBaseID:FBgn0035691 Length:662 Species:Drosophila melanogaster


Alignment Length:311 Identity:71/311 - (22%)
Similarity:109/311 - (35%) Gaps:91/311 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 LAAFPSPASSMASPQSVYSYQQMTPPSSPGS-------DLETGSEPED---LSVRNDIPLPALFH 202
            :..|.|.|....:|:.         |..|.|       .||.....||   |..:.|..|..  |
  Fly    91 MGVFESIADDSEAPER---------PEEPASFDPLLNNKLEMIDNEEDVFKLLEKVDKELEE--H 144

  Fly   203 LFDEAKSSSSGA-------SVSSSSGYSYTPAMSASSASVAANHAKNYR-FKCDECQKMYSTSMG 259
            ..|:::...|.|       ....|.|::.....:.....:|.:..|.:| ..|..||:.:.....
  Fly   145 SRDQSEEHFSSAEHNGLEEEKKESEGFNSDDEQAMGQRRIANDKRKLFRLMSCSICQQKFKKQSK 209

  Fly   260 LSKHRQFHCPAA--ECNQEKKTHSCEECGKLYTTIGALKMHI------RTHTLPC---------- 306
            ..:|.:.|....  :|.:       |.|.|.:||.|||::|:      :..|:||          
  Fly   210 FEEHMKHHNDLLPFQCQE-------ESCRKGFTTAGALRLHVDYAHSKKEDTVPCTVEGCQLVFS 267

  Fly   307 -------------------------KCPICGKAFSRPWLLQGHIRTHTGEK-PFQCPDCPRSFAD 345
                                     .|..||..|..|..::.|:.|||||: |:.|..|.:.|..
  Fly   268 RLRLLTIHLKKVHNQARVIAPRGEQSCKECGVVFRCPVAMKKHMYTHTGEELPYPCTICGKGFYI 332

  Fly   346 RSNLRAHQQTHVDVKKYACQVC------HKSFSRMSLLNKHSSSN---CTI 387
            .|.|:.|...|..:|.|.||.|      .:.:|:..|:  |:..|   |.|
  Fly   333 NSALKNHLLRHAGIKNYVCQYCGVRKTTRQEWSKHILI--HTQRNQFKCRI 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 6/19 (32%)
zf-H2C2_2 321..344 CDD:290200 9/23 (39%)
zf-C2H2 334..356 CDD:278523 6/21 (29%)
C2H2 Zn finger 336..356 CDD:275368 6/19 (32%)
zf-H2C2_2 348..373 CDD:290200 8/30 (27%)
C2H2 Zn finger 364..380 CDD:275368 5/21 (24%)
C2H2 Zn finger 247..267 CDD:275368 4/19 (21%)
C2H2 Zn finger 282..302 CDD:275368 9/25 (36%)
zf-C2H2 306..328 CDD:278523 7/56 (13%)
COG5048 307..>356 CDD:227381 18/49 (37%)
CG7386NP_648036.1 zf-AD 10..81 CDD:214871
C2H2 Zn finger 197..217 CDD:275368 4/19 (21%)
C2H2 Zn finger 294..314 CDD:275368 6/19 (32%)
C2H2 Zn finger 323..343 CDD:275368 6/19 (32%)
C2H2 Zn finger 351..371 CDD:275368 5/21 (24%)
C2H2 Zn finger 379..400 CDD:275368 2/3 (67%)
C2H2 Zn finger 408..428 CDD:275368
C2H2 Zn finger 436..456 CDD:275368
C2H2 Zn finger 534..555 CDD:275368
C2H2 Zn finger 563..583 CDD:275368
zf-H2C2_2 575..600 CDD:290200
C2H2 Zn finger 591..611 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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