DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and D19B

DIOPT Version :10

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_477297.1 Gene:D19B / 38717 FlyBaseID:FBgn0022699 Length:774 Species:Drosophila melanogaster


Alignment Length:179 Identity:55/179 - (30%)
Similarity:76/179 - (42%) Gaps:39/179 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 HAKNYR----FKC--DECQKMYSTSMGLSKHRQ--------FH-CPAAECNQE-----------K 277
            |.|::.    |:|  :.|:|.::|:.||..|.:        .| |....||:.           |
  Fly   271 HMKHHNDLLPFQCTVESCRKGFTTANGLRVHVEHAHTETSAMHPCTYEGCNKSFARPVLLSFHMK 335

  Fly   278 KTHS---------CEECGKLYTTIGALKMHIRTHT---LPCKCPICGKAFSRPWLLQGHIRTHTG 330
            :.|.         |.||.|::....|||.|:..||   ||..|.||||.|....:|:.|:..|.|
  Fly   336 RVHKVDTPQRDFPCTECEKVFRCPTALKKHMYKHTGEELPFACEICGKRFPINSVLRDHLLRHAG 400

  Fly   331 EKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVC-HKSFSRMSLLN 378
            .|...||.|......|.....|..||...|||.|:.| |.|.::.:|.|
  Fly   401 IKNHVCPYCGVGKTTRQEWNKHILTHTKEKKYECRQCDHASHNKQALAN 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 SFP1 <245..303 CDD:227516 22/88 (25%)
C2H2 Zn finger 247..267 CDD:275368 7/29 (24%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-C2H2 306..328 CDD:395048 8/21 (38%)
C2H2 Zn finger 308..328 CDD:275368 8/19 (42%)
zf-H2C2_2 321..344 CDD:463886 8/22 (36%)
zf-C2H2 334..356 CDD:395048 5/21 (24%)
C2H2 Zn finger 336..356 CDD:275368 5/19 (26%)
zf-H2C2_2 348..373 CDD:463886 10/25 (40%)
C2H2 Zn finger 364..380 CDD:275368 6/16 (38%)
D19BNP_477297.1 zf-AD 12..83 CDD:214871
C2H2 Zn finger 255..275 CDD:275368 2/3 (67%)
SFP1 <266..365 CDD:227516 23/93 (25%)
C2H2 Zn finger 283..335 CDD:275368 11/51 (22%)
C2H2 Zn finger 318..338 CDD:275368 3/19 (16%)
COG5048 <347..512 CDD:227381 39/103 (38%)
C2H2 Zn finger 349..369 CDD:275368 8/19 (42%)
C2H2 Zn finger 378..398 CDD:275368 8/19 (42%)
C2H2 Zn finger 406..426 CDD:275368 5/19 (26%)
C2H2 Zn finger 434..455 CDD:275368 6/16 (38%)
C2H2 Zn finger 463..483 CDD:275368
C2H2 Zn finger 491..511 CDD:275368
C2H2 Zn finger 586..607 CDD:275368
C2H2 Zn finger 615..635 CDD:275368
zf-H2C2_2 627..652 CDD:463886
C2H2 Zn finger 643..663 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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