DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and Blimp-1

DIOPT Version :10

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster


Alignment Length:496 Identity:119/496 - (23%)
Similarity:177/496 - (35%) Gaps:155/496 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KSCPLKKRPI---VFVEERLPQTEALALTKDSQFAQDQPQD--------------LSLKRGRDEE 53
            |:| :|:.|.   |..|..|||.|     ::.|....:|..              |.::|.|:.|
  Fly   531 KTC-VKQEPSLKEVDQEMSLPQEE-----EEDQVMHPEPDSICPSTTTHLGDEHMLMMERERERE 589

  Fly    54 TQDYQQPEPKRDY-----VLNLSKTPERNSSSSSNSCL-LSPPVEAQDYLPTEIHMR-GLTAGTT 111
            .:..|:.||....     |:.|    |.||...:.:.: ||.|....| .|.|.:|| |..:.:.
  Fly   590 RERIQEREPSNQQPASSTVIVL----EHNSGGQARTIVPLSKPYYEPD-PPGERYMRFGQPSSSI 649

  Fly   112 GYTTATPTTINPFQSAFVMAAGCNPISALWSSYQPHLAAFPSPASSMASPQSVYSY---QQMTPP 173
            ..|..  |:.:..::|...|..|...:          ||.|.|.|   ..:..|||   |:....
  Fly   650 LETIL--TSQHRLEAAAAAANACRQAN----------AATPPPTS---PTEMAYSYKKSQRYGNA 699

  Fly   174 SSPGSDLETGSEPEDLS----------------VRNDI--PLPALFH---LFDEAK-----SSSS 212
            .||.|....|..||.||                ::.:.  |.|:..|   :|..::     .:..
  Fly   700 VSPDSSSNLGQNPEQLSSSAVVVGEQEMTRATMIKGECSPPPPSHHHHNVIFSPSRHAAYLGAGE 764

  Fly   213 GASVSSSSGY--------------------SYTPAMSASSASVAANHAKNYRFKCDECQKMYSTS 257
            ....|.|.||                    |::|....|:||..|..|.|..        :..||
  Fly   765 AGGHSPSPGYPGYPHYGAAATSTFHSPPHSSHSPFDRQSNASSGAGSATNLH--------LLQTS 821

  Fly   258 MGLSKHRQFH-------------------------CPAAEC--------------------NQEK 277
            ..:..|....                         ||.:..                    .::.
  Fly   822 TQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDG 886

  Fly   278 KTH-SCEECGKLYTTIGALKMHIRTHT--LPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDC 339
            |.| .|..|.|.:..:..||:|:|||:  .|.||.:|.|:|::...||.|...||||||.||..|
  Fly   887 KMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDIC 951

  Fly   340 PRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKH 380
            .:.|:..|||:.|.:.|...|.|||.:|.:.|::...|..|
  Fly   952 KKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLH 992

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 SFP1 <245..303 CDD:227516 15/103 (15%)
C2H2 Zn finger 247..267 CDD:275368 3/19 (16%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-C2H2 306..328 CDD:395048 8/21 (38%)
C2H2 Zn finger 308..328 CDD:275368 7/19 (37%)
zf-H2C2_2 321..344 CDD:463886 12/22 (55%)
zf-C2H2 334..356 CDD:395048 8/21 (38%)
C2H2 Zn finger 336..356 CDD:275368 7/19 (37%)
zf-H2C2_2 348..373 CDD:463886 10/24 (42%)
C2H2 Zn finger 364..380 CDD:275368 4/15 (27%)
Blimp-1NP_001261442.1 PR-SET_PRDM1 120..262 CDD:380964
zf-C2HE <871..912 CDD:465082 9/40 (23%)
C2H2 Zn finger 892..912 CDD:275368 7/19 (37%)
zf-H2C2_2 904..929 CDD:463886 12/24 (50%)
C2H2 Zn finger 920..940 CDD:275368 7/19 (37%)
SFP1 <938..1020 CDD:227516 23/55 (42%)
C2H2 Zn finger 948..968 CDD:275368 7/19 (37%)
C2H2 Zn finger 976..996 CDD:275368 5/17 (29%)
C2H2 Zn finger 1004..1023 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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