DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and Kah

DIOPT Version :10

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_612040.1 Gene:Kah / 38072 FlyBaseID:FBgn0035144 Length:442 Species:Drosophila melanogaster


Alignment Length:253 Identity:100/253 - (39%)
Similarity:131/253 - (51%) Gaps:36/253 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 PQSVYSYQQMTPPSSPGSDLETGS-EPEDLSVRNDIPLPALFH-LFDEAK-------SSSSGASV 216
            |:.:|:..|:...:.....|.|.. :|..|...:|.......| :||..|       .|:|.||.
  Fly    11 PEELYNLTQLAEVTLSVGPLVTDEVKPLPLYASSDDDSNYYSHKVFDRRKLRRCTISDSNSCASS 75

  Fly   217 SSSSGYSYTPAMSASS--------ASVAANHAKNYRFK-----------CDECQKMYSTSMGLSK 262
            ||||    |.:..:|.        :||..:|.:.....           |.||.|.||||..|::
  Fly    76 SSSS----TSSRQSSEDHLGLQGHSSVHHHHGEQGEILNSTSLLEDEHICPECGKKYSTSSNLAR 136

  Fly   263 HRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRT 327
            |||.|    ....:||...|..|.|:|.::.|..||:|||...|:|..|||.|||||||||||||
  Fly   137 HRQTH----RSIMDKKARHCPYCEKVYVSMPAYSMHVRTHNQGCECQFCGKRFSRPWLLQGHIRT 197

  Fly   328 HTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNC 385
            |||||||:|..|.::|||:||||||.|||.:.|.:.|..|.|:|:..|.|.||..|:|
  Fly   198 HTGEKPFKCGVCEKAFADKSNLRAHIQTHSNTKPHTCARCGKAFALKSYLYKHEESSC 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 SFP1 <245..303 CDD:227516 24/68 (35%)
C2H2 Zn finger 247..267 CDD:275368 12/19 (63%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-C2H2 306..328 CDD:395048 17/21 (81%)
C2H2 Zn finger 308..328 CDD:275368 16/19 (84%)
zf-H2C2_2 321..344 CDD:463886 16/22 (73%)
zf-C2H2 334..356 CDD:395048 13/21 (62%)
C2H2 Zn finger 336..356 CDD:275368 12/19 (63%)
zf-H2C2_2 348..373 CDD:463886 13/24 (54%)
C2H2 Zn finger 364..380 CDD:275368 6/15 (40%)
KahNP_612040.1 C2H2 Zn finger 121..141 CDD:275368 12/19 (63%)
zf-C2H2 176..198 CDD:395048 17/21 (81%)
C2H2 Zn finger 178..198 CDD:275368 16/19 (84%)
zf-H2C2_2 191..214 CDD:463886 16/22 (73%)
zf-C2H2 204..226 CDD:395048 13/21 (62%)
C2H2 Zn finger 206..226 CDD:275368 12/19 (63%)
C2H2 Zn finger 234..250 CDD:275368 6/15 (40%)

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