DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and Kr

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001261181.1 Gene:Kr / 38012 FlyBaseID:FBgn0001325 Length:502 Species:Drosophila melanogaster


Alignment Length:385 Identity:97/385 - (25%)
Similarity:157/385 - (40%) Gaps:81/385 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LSLKRGRDEETQ-------DYQQPEPKRDYVLNLSKTPERNSSSSSNSCLLSPPVEAQDYLPTEI 101
            :|:...:|.:|:       ..:|.:...|..::||.....|:|::| :..:.|.:..|.      
  Fly     1 MSISMLQDAQTRTLAAALAGIKQEDVHLDRSMSLSPPMSANTSATS-AAAIYPAMGLQQ------ 58

  Fly   102 HMRGLTAGTTGYTTATPTTI---NPFQSAFVMAAGCNPISALWSSYQPH--LAAFPSPASSMA-S 160
                 .|..:.:...:||.:   |...:||:...   |:|.|.::..||  .|.|.:.|:..: .
  Fly    59 -----AAAASAFGMLSPTQLLAANRQAAAFMAQL---PMSTLANTLFPHNPAALFGAWAAQQSLP 115

  Fly   161 PQSVYSYQQMTPPSSPGSDLET--GSEPEDLSVRNDIPL---PA--------------------- 199
            ||..:.:   :||:||.|.|.|  ||....|:..|..|.   ||                     
  Fly   116 PQGTHLH---SPPASPHSPLSTPLGSGKHPLNSPNSTPQHHEPAKKARKLSVKKEFQTEISMSVN 177

  Fly   200 -LFHLFDEAKSSSSGASVS-SSSGYSYTPAM-----SASSASVAANHAKNYRFKCDECQKMYSTS 257
             ::|        :||..:| .|||.|.....     :|....|:.:.:::..|.|..|.:.:...
  Fly   178 DMYH--------TSGGPISPPSSGSSPNSTHDGAGGNAGCVGVSKDPSRDKSFTCKICSRSFGYK 234

  Fly   258 MGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIRTHT--LPCKCPICGKAFSRPWL 320
            ..|..|.:.|       ..:|...|.||.|.:|....||.|:|.||  .|..|..|.:.|.:...
  Fly   235 HVLQNHERTH-------TGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVAN 292

  Fly   321 LQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKH 380
            |:.|:|.||||:|:.|..|...|:|.:.|::|...|...|.:.|:.||..|.|...|..|
  Fly   293 LRRHLRVHTGERPYTCEICDGKFSDSNQLKSHMLVHNGEKPFECERCHMKFRRRHHLMNH 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 6/19 (32%)
zf-H2C2_2 321..344 CDD:290200 10/22 (45%)
zf-C2H2 334..356 CDD:278523 6/21 (29%)
C2H2 Zn finger 336..356 CDD:275368 6/19 (32%)
zf-H2C2_2 348..373 CDD:290200 8/24 (33%)
C2H2 Zn finger 364..380 CDD:275368 6/15 (40%)
C2H2 Zn finger 247..267 CDD:275368 4/19 (21%)
C2H2 Zn finger 282..302 CDD:275368 9/19 (47%)
zf-C2H2 306..328 CDD:278523 6/21 (29%)
COG5048 307..>356 CDD:227381 17/48 (35%)
KrNP_001261181.1 C2H2 Zn finger 224..244 CDD:275368 4/19 (21%)
zf-H2C2_2 237..261 CDD:290200 8/30 (27%)
C2H2 Zn finger 252..272 CDD:275368 9/19 (47%)
zf-H2C2_2 264..289 CDD:290200 10/24 (42%)
C2H2 Zn finger 280..300 CDD:275368 6/19 (32%)
zf-H2C2_2 292..316 CDD:290200 10/23 (43%)
C2H2 Zn finger 308..328 CDD:275368 6/19 (32%)
zf-H2C2_2 321..345 CDD:290200 8/23 (35%)
C2H2 Zn finger 336..352 CDD:275368 6/15 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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