DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and Scrt1

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001124042.1 Gene:Scrt1 / 366951 RGDID:1306236 Length:348 Species:Rattus norvegicus


Alignment Length:364 Identity:122/364 - (33%)
Similarity:159/364 - (43%) Gaps:82/364 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KDSQFAQDQPQDLSLKRGRDEETQDYQQPEPKRDYVLNLSKTPERNSSSSSNSCLLSPPVEAQDY 96
            :|..:..|.....|:..| |.|....:.|.|:..|.  .:...|...::|.:    :||...:..
  Rat    36 QDKGYLSDYVGPASVYDG-DAEAALLKGPSPEPMYA--AAVRGELGPAASGS----APPPTPRPE 93

  Fly    97 LPTEI--HMRGLTAGTTGYTTATPTTINPFQSAFVM--------AAGCNPISALWSSYQPHLAAF 151
            |.|..  ::.|..|.:.||..          .||.:        ||..|..||            
  Rat    94 LATAAGGYINGDAAVSEGYAA----------DAFFITDGRSRRKAANANAASA------------ 136

  Fly   152 PSPASSMASPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASV 216
            ||.||..|                |.||...|..|                   ..:.|.||   
  Rat   137 PSTASVAA----------------PDSDAGGGGGP-------------------GTRGSGSG--- 163

  Fly   217 SSSSGYSYTPAMSASSASVAANHAKNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHS 281
            |:|.|.:...|.:.:.|...|..|.. |..|.||.|.|:||..||:|:|.|    .....:....
  Rat   164 SASRGGTRVGAGTEARAGPGATGAGG-RHACGECGKTYATSSNLSRHKQTH----RSLDSQLARR 223

  Fly   282 CEECGKLYTTIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADR 346
            |..|||:|.::.|:.||:.||.|..||.:||||||||||||||:|:|||||||.|..|.::||||
  Rat   224 CPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADR 288

  Fly   347 SNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNC 385
            ||||||.|||...|.:.|:.|.|||:..|.||||..|.|
  Rat   289 SNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESAC 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 16/19 (84%)
zf-H2C2_2 321..344 CDD:290200 14/22 (64%)
zf-C2H2 334..356 CDD:278523 14/21 (67%)
C2H2 Zn finger 336..356 CDD:275368 13/19 (68%)
zf-H2C2_2 348..373 CDD:290200 14/24 (58%)
C2H2 Zn finger 364..380 CDD:275368 8/15 (53%)
C2H2 Zn finger 247..267 CDD:275368 11/19 (58%)
C2H2 Zn finger 282..302 CDD:275368 8/19 (42%)
zf-C2H2 306..328 CDD:278523 17/21 (81%)
COG5048 307..>356 CDD:227381 37/48 (77%)
Scrt1NP_001124042.1 C2H2 Zn finger 193..213 CDD:275368 11/19 (58%)
C2H2 Zn finger 224..241 CDD:275371 7/16 (44%)
COG5048 <245..>313 CDD:227381 44/67 (66%)
C2H2 Zn finger 250..270 CDD:275368 16/19 (84%)
C2H2 Zn finger 278..298 CDD:275368 13/19 (68%)
C2H2 Zn finger 306..322 CDD:275368 8/15 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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