DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and Scrt2

DIOPT Version :10

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001178834.1 Gene:Scrt2 / 366229 RGDID:1564796 Length:305 Species:Rattus norvegicus


Alignment Length:282 Identity:104/282 - (36%)
Similarity:140/282 - (49%) Gaps:30/282 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 TINPFQSAFVM------------AAGCNPISALWSSYQPHLAAFPSPASSMASPQSVYSYQQMTP 172
            |.:|.::|:|:            .|.|.|.|......:|.|...|:..:..|:....||     .
  Rat    24 TYHPLETAYVLPGTRGPPGDNGYVAHCMPPSGYDGEQKPGLELAPTEPAYPAAASEEYS-----D 83

  Fly   173 PSSPGSDLETGSEPEDLSVRNDIPLPALFHLFD----EAKSSSSGASVSSSSGYSYTPAMSASSA 233
            |.||.|.|.......:.:|.:...:.|.| :.|    ..::.:.|.:..:..|.........|.|
  Rat    84 PESPQSSLSARYFRGEAAVTDSYSMDAFF-ISDGRSRRRRAGAGGDAAGAGDGGGGGERAGRSGA 147

  Fly   234 SVAANHAKNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMH 298
            :....|    |..|.||.|.|:||..||:|:|.|    .....:....|..|||.|.::.||.||
  Rat   148 TAGGGH----RHACAECGKTYATSSNLSRHKQTH----RSLDSQLARKCPTCGKAYVSMPALAMH 204

  Fly   299 IRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYA 363
            :.||.|..||.:||||||||||||||:|:|||||||.|..|.::||||||||||.|||...|.|.
  Rat   205 VLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYR 269

  Fly   364 CQVCHKSFSRMSLLNKHSSSNC 385
            |:.|.|||:..|.|:||..:.|
  Rat   270 CRQCDKSFALKSYLHKHCEAAC 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 SFP1 <245..303 CDD:227516 22/57 (39%)
C2H2 Zn finger 247..267 CDD:275368 11/19 (58%)
C2H2 Zn finger 282..302 CDD:275368 9/19 (47%)
zf-C2H2 306..328 CDD:395048 17/21 (81%)
C2H2 Zn finger 308..328 CDD:275368 16/19 (84%)
zf-H2C2_2 321..344 CDD:463886 14/22 (64%)
zf-C2H2 334..356 CDD:395048 14/21 (67%)
C2H2 Zn finger 336..356 CDD:275368 13/19 (68%)
zf-H2C2_2 348..373 CDD:463886 15/24 (63%)
C2H2 Zn finger 364..380 CDD:275368 7/15 (47%)
Scrt2NP_001178834.1 C2H2 Zn finger 157..177 CDD:275368 11/19 (58%)
COG5048 <210..>277 CDD:227381 45/66 (68%)
C2H2 Zn finger 214..234 CDD:275368 16/19 (84%)
C2H2 Zn finger 242..262 CDD:275368 13/19 (68%)
C2H2 Zn finger 270..286 CDD:275368 7/15 (47%)

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