DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and wor

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster


Alignment Length:501 Identity:171/501 - (34%)
Similarity:228/501 - (45%) Gaps:141/501 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YKSCPLKKRPIVFVEERLPQ-------------TEALALTKDSQF-----AQDQPQDLSLKRGRD 51
            |..||||||||: |||..|:             ..:.|:..:..:     .:.||....|:|..|
  Fly     6 YSRCPLKKRPIM-VEESSPEDHLSHDEGPVDLSVASAAVPMEPHWMAKSEPEPQPVPTELRRRFD 69

  Fly    52 ---------------EETQDYQQPEP----KRDYVLNLSK--------TPERNSSSSSNSCLLSP 89
                           |||::..:..|    :.:...:|::        .||..        ::.|
  Fly    70 AAMNQTKEQLARRIWEETREIARAFPDVFTREEIAKSLARLGYGEFELPPEEE--------VMEP 126

  Fly    90 PVEAQDYLPTEIHMRGLTAGTTGYT-TATPTTINPFQS---AFVMAAGCNPISALWSSYQ----- 145
            ..|.:.:||..            || .|:||.|....|   .|.:....|.:....:.|:     
  Fly   127 EPEPEQHLPLR------------YTRDASPTIIKAEPSDEEQFPLRNYNNNLLKSIAEYEDCMKM 179

  Fly   146 ----------PHLAAFPSPASSMASPQ---------------------SVYSYQQMTPPSSPGS- 178
                      |....|..|.:.:|.|:                     ::.|.|.|.|..:|.. 
  Fly   180 QNIKEEIPPIPSPQLFYPPPTPLAEPEDLSVTQRRVLSENMNLQNVARALLSMQHMAPQHAPPPI 244

  Fly   179 DLETGSEPEDLS-----VRNDI--------PLPALF---------HLFD-------EAKSSSSGA 214
            |:|...|.:|::     ..||:        ...|.:         |.::       .::...|||
  Fly   245 DMEEDQENQDINQLKIKSSNDLYYQCQQCNKCYATYAGLVKHQQTHAYESTEYKIIRSQPGGSGA 309

  Fly   215 SVSSSSGYSYTPAMSASSASVAANHAKNY-----RFKCDECQKMYSTSMGLSKHRQFHCPAAECN 274
            .|..:...:...:....:|:||:..:...     |:.|.:|.|.|||..|||||:|||||:||.|
  Fly   310 IVDQTEFCTDQASALIQAANVASAQSMQKPVGVPRYHCQDCGKSYSTYSGLSKHQQFHCPSAEGN 374

  Fly   275 QEKKTHSCEECGKLYTTIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDC 339
            |.||..||:.|.|.|.::||||||||||||||||||||||||||||||||||||||||||.|..|
  Fly   375 QVKKVFSCKNCDKTYVSLGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFSCQHC 439

  Fly   340 PRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNC 385
            .|:||||||||||.|||.|||||:|..|.|||||||||.||..|.|
  Fly   440 NRAFADRSNLRAHMQTHSDVKKYSCPTCTKSFSRMSLLAKHLQSGC 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 19/19 (100%)
zf-H2C2_2 321..344 CDD:290200 17/22 (77%)
zf-C2H2 334..356 CDD:278523 15/21 (71%)
C2H2 Zn finger 336..356 CDD:275368 14/19 (74%)
zf-H2C2_2 348..373 CDD:290200 18/24 (75%)
C2H2 Zn finger 364..380 CDD:275368 11/15 (73%)
C2H2 Zn finger 247..267 CDD:275368 12/19 (63%)
C2H2 Zn finger 282..302 CDD:275368 12/19 (63%)
zf-C2H2 306..328 CDD:278523 21/21 (100%)
COG5048 307..>356 CDD:227381 42/48 (88%)
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368 1/19 (5%)
C2H2 Zn finger 317..334 CDD:275368 3/16 (19%)
zf-C2H2 345..367 CDD:278523 12/21 (57%)
C2H2 Zn finger 347..367 CDD:275368 12/19 (63%)
PHA00732 379..>417 CDD:177300 28/37 (76%)
C2H2 Zn finger 382..402 CDD:275368 12/19 (63%)
zf-C2H2_8 405..482 CDD:292531 64/76 (84%)
zf-C2H2 406..428 CDD:278523 21/21 (100%)
C2H2 Zn finger 408..428 CDD:275368 19/19 (100%)
zf-H2C2_2 421..444 CDD:290200 17/22 (77%)
zf-C2H2 434..456 CDD:278523 15/21 (71%)
C2H2 Zn finger 436..456 CDD:275368 14/19 (74%)
zf-H2C2_2 448..473 CDD:290200 18/24 (75%)
C2H2 Zn finger 464..481 CDD:275368 12/16 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457213
Domainoid 1 1.000 50 1.000 Domainoid score I11673
eggNOG 1 0.900 - - E1_KOG2462
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D100234at6656
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14747
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.750

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