DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and esg

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_476600.1 Gene:esg / 34903 FlyBaseID:FBgn0001981 Length:470 Species:Drosophila melanogaster


Alignment Length:470 Identity:173/470 - (36%)
Similarity:226/470 - (48%) Gaps:120/470 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NYKSCPLKKRPIVFVEERLPQTEALALTKDSQFAQDQPQDLSLKR-------------------- 48
            ||..|||||||:.:      |.||   .::.....::||||.:|:                    
  Fly    12 NYSKCPLKKRPVNY------QFEA---PQNHSNTPNEPQDLCVKKMEILEENPSEELINVSDCCE 67

  Fly    49 --GRD-EETQDYQQPEPKRDYVLNLSKTPERNSSSS-SNSCLLSPPVEAQDYLPT---------E 100
              |.| :.|.|....|...|..:::...|.:..::: :.:..::....|...:||         .
  Fly    68 DEGVDVDHTDDEHIEEEDEDVDVDVDSDPNQTQAAALAAAAAVAAAAAASVVVPTPTYPKYPWNN 132

  Fly   101 IHMRGLTAGTTGYTTATPTTIN-------PFQSAFVMAAGCNPISALWS-SYQPH---------- 147
            .||       :.||.....|||       |.:...:  |..:|..:|.| |..||          
  Fly   133 FHM-------SPYTAEFYRTINQQGHQILPLRGDLI--APSSPSDSLGSLSPPPHHYLHGRASSV 188

  Fly   148 -------------------------LAAFPS------------PASSMASPQSVYSYQQMTPPSS 175
                                     :..:||            |.|...|..|.||.:.|||.||
  Fly   189 SPPMRSEIIHRPIGVRQHRFLPYPQMPGYPSLGGYTHTHHHHAPISPAYSENSYYSMRSMTPESS 253

  Fly   176 PGSDLETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASVSSSSGYSYTPAMSASSASVAANHA 240
            ..|.|     |||||:::.       :|.....:|..|...::.:|......|..:||....|..
  Fly   254 CSSSL-----PEDLSLKHK-------NLNLNLNTSQPGEQAAAKTGDMSPETMPNASAKKDKNQP 306

  Fly   241 KNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIRTHTLP 305
            .  |::|.:|||.|||..||:||:||||||||.||.||:.||::|.|.|.::|||||||||||||
  Fly   307 P--RYQCPDCQKSYSTFSGLTKHQQFHCPAAEGNQVKKSFSCKDCDKTYVSLGALKMHIRTHTLP 369

  Fly   306 CKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKS 370
            |||.:||||||||||||||||||||||||.|..|.|:||||||||||.|||.|:|||:|..|.|:
  Fly   370 CKCNLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCHRAFADRSNLRAHLQTHSDIKKYSCTSCSKT 434

  Fly   371 FSRMSLLNKHSSSNC 385
            |||||||.|||...|
  Fly   435 FSRMSLLTKHSEGGC 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 17/19 (89%)
zf-H2C2_2 321..344 CDD:290200 17/22 (77%)
zf-C2H2 334..356 CDD:278523 15/21 (71%)
C2H2 Zn finger 336..356 CDD:275368 14/19 (74%)
zf-H2C2_2 348..373 CDD:290200 16/24 (67%)
C2H2 Zn finger 364..380 CDD:275368 10/15 (67%)
C2H2 Zn finger 247..267 CDD:275368 12/19 (63%)
C2H2 Zn finger 282..302 CDD:275368 12/19 (63%)
zf-C2H2 306..328 CDD:278523 19/21 (90%)
COG5048 307..>356 CDD:227381 40/48 (83%)
esgNP_476600.1 zf-C2H2 309..331 CDD:278523 12/21 (57%)
C2H2 Zn finger 311..331 CDD:275370 12/19 (63%)
zf-C2H2 344..366 CDD:278523 13/21 (62%)
C2H2 Zn finger 346..366 CDD:275368 12/19 (63%)
zf-C2H2 370..392 CDD:278523 19/21 (90%)
C2H2 Zn finger 372..392 CDD:275368 17/19 (89%)
zf-H2C2_2 385..408 CDD:290200 17/22 (77%)
zf-C2H2 398..420 CDD:278523 15/21 (71%)
C2H2 Zn finger 400..420 CDD:275368 14/19 (74%)
C2H2 Zn finger 428..444 CDD:275368 10/15 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468407
Domainoid 1 1.000 46 1.000 Domainoid score I8191
eggNOG 1 0.900 - - E1_KOG2462
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D100234at6656
OrthoFinder 1 1.000 - - FOG0004977
OrthoInspector 1 1.000 - - otm14747
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.750

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