DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and CG2202

DIOPT Version :10

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_572657.2 Gene:CG2202 / 32014 FlyBaseID:FBgn0030240 Length:889 Species:Drosophila melanogaster


Alignment Length:192 Identity:56/192 - (29%)
Similarity:79/192 - (41%) Gaps:59/192 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 CDECQKMYSTSMGLSKHRQFH------CPA--------AECNQEKKTHS---------------- 281
            |:.|.|.:|:...|.||...|      |..        |:..:.:|||:                
  Fly   573 CEYCSKRFSSKTYLRKHTLLHTDFLYACKTCDETFRERAQLREHEKTHTGQRNFLCCICGDSFAR 637

  Fly   282 ------------------CEECGKLYTTIGALKMHIRTH--TLPCKCPICGKAFSRPWLLQGHIR 326
                              |..|.|.:.....||:|.|.|  |.|..|..|||:|.|.:.|..|:|
  Fly   638 NDYLRVHMRRHNGEKPYKCRFCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMR 702

  Fly   327 THTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSR--------MSLLNKH 380
            |||||:|::|..||:||...::|:||.:.|.. ::|.|..|...|.:        ||..|||
  Fly   703 THTGERPYKCDQCPKSFTQSNDLKAHIRRHTG-ERYKCPHCDAYFLQLYNMRNHCMSAHNKH 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 SFP1 <245..303 CDD:227516 21/105 (20%)
C2H2 Zn finger 247..267 CDD:275368 7/19 (37%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-C2H2 306..328 CDD:395048 9/21 (43%)
C2H2 Zn finger 308..328 CDD:275368 9/19 (47%)
zf-H2C2_2 321..344 CDD:463886 13/22 (59%)
zf-C2H2 334..356 CDD:395048 8/21 (38%)
C2H2 Zn finger 336..356 CDD:275368 8/19 (42%)
zf-H2C2_2 348..373 CDD:463886 8/24 (33%)
C2H2 Zn finger 364..380 CDD:275368 6/23 (26%)
CG2202NP_572657.2 zf-AD 45..121 CDD:214871
C2H2 Zn finger 150..171 CDD:275368
C2H2 Zn finger 192..213 CDD:275370
C2H2 Zn finger 221..239 CDD:275370
COG5048 <443..730 CDD:227381 46/156 (29%)
C2H2 Zn finger 476..496 CDD:275368
C2H2 Zn finger 504..525 CDD:275368
C2H2 Zn finger 532..548 CDD:275368
C2H2 Zn finger 573..593 CDD:275368 7/19 (37%)
C2H2 Zn finger 600..620 CDD:275368 3/19 (16%)
C2H2 Zn finger 628..648 CDD:275368 0/19 (0%)
C2H2 Zn finger 656..676 CDD:275368 7/19 (37%)
C2H2 Zn finger 684..704 CDD:275368 9/19 (47%)
C2H2 Zn finger 712..732 CDD:275368 8/19 (42%)
C2H2 Zn finger 739..755 CDD:275368 3/15 (20%)
Blue background indicates that the domain is not in the aligned region.

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