DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment sna and CG42726

DIOPT Version :9

Sequence 1:	NP_476732.1	Gene:	sna / 34908	FlyBaseID:	FBgn0003448	Length:	390	Species:	Drosophila melanogaster
Sequence 2:	NP_732017.3	Gene:	CG42726 / 318709	FlyBaseID:	FBgn0261679	Length:	441	Species:	Drosophila melanogaster

Alignment Length:	169	Identity:	48/169 - (28%)
Similarity:	77/169 - (45%)	Gaps:	38/169 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   247 CDECQKMYSTSMGLSKHRQ---------------FHCPAAECNQE-----------------KKT 279
            |.||:...|..:..::..|               :||..  ||::                 .|.
  Fly    38 CLECRVARSVDIQETQETQARTSADKRIIVTDKGYHCTV--CNKDFRSRTQQYYHLTCGNDLLKK 100

  Fly   280 HSCEECGKLYTTIGALKMHIRTHTLPCK--CPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRS 342
            .:|:|||:.:.|...||.|:.:|....|  |.:|.|:|.:|.:||.|:.||..||.. ||.|.:.
  Fly   101 FNCKECGRRFATSSHLKYHLMSHEKQSKHSCSVCHKSFKQPIVLQRHMLTHNQEKHL-CPICQKV 164

  Fly   343 FADRSNLRAHQQTHVDV-KKYACQVCHKSFSRMSLLNKH 380
            |..:|:|.:|...|.|: .::.|::|.|.|...:.||:|
  Fly   165 FRRKSSLASHLAIHSDLGLQFKCELCSKHFQNKANLNQH 203

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
sna	NP_476732.1	C2H2 Zn finger	308..328	CDD:275368	8/19 (42%)
		zf-H2C2_2	321..344	CDD:290200	10/22 (45%)
		zf-C2H2	334..356	CDD:278523	7/21 (33%)
		C2H2 Zn finger	336..356	CDD:275368	7/19 (37%)
		zf-H2C2_2	348..373	CDD:290200	8/25 (32%)
		C2H2 Zn finger	364..380	CDD:275368	6/15 (40%)
		C2H2 Zn finger	247..267	CDD:275368	5/34 (15%)
		C2H2 Zn finger	282..302	CDD:275368	8/19 (42%)
		zf-C2H2	306..328	CDD:278523	9/23 (39%)
		COG5048	307..>356	CDD:227381	20/50 (40%)
CG42726	NP_732017.3	C2H2 Zn finger	74..94	CDD:275368	3/21 (14%)
		C2H2 Zn finger	103..123	CDD:275368	8/19 (42%)
		COG5048	<112..288	CDD:227381	34/93 (37%)
		C2H2 Zn finger	131..151	CDD:275368	8/19 (42%)
		Chordopox_A33R	151..>254	CDD:283591	19/54 (35%)
		C2H2 Zn finger	158..178	CDD:275368	7/19 (37%)
		C2H2 Zn finger	187..207	CDD:275368	7/17 (41%)
		C2H2 Zn finger	216..236	CDD:275368
		C2H2 Zn finger	244..264	CDD:275368
		C2H2 Zn finger	272..290	CDD:275368
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45468418
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930