DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and CG12236

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_727050.1 Gene:CG12236 / 31523 FlyBaseID:FBgn0029822 Length:553 Species:Drosophila melanogaster


Alignment Length:347 Identity:70/347 - (20%)
Similarity:112/347 - (32%) Gaps:128/347 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LKKRPIVFVEERLPQTEALALTKDSQFAQDQPQDLSLKRGRDEETQDYQQPEPKRDYVLNLSKTP 74
            :|||.|.|.::            |......:..|.::|   ||:|               :.||.
  Fly   280 VKKRKITFSDD------------DDNMYTTETVDYAVK---DEQT---------------IVKTA 314

  Fly    75 ERNSSSSSNSCLLSPPVEAQDYLPTEIHMRGLTAGTTGYTTATPTTINPFQSAFVMAAGCNPISA 139
            |......      :..::..||:..|:..| |:.|.|..|:...||          ||..|    
  Fly   315 EMTFLRG------AVKMDIPDYIVGEVDDR-LSDGATPQTSQDATT----------AAAQN---- 358

  Fly   140 LWSSYQPHLAAFPSPASSMASPQSVYSYQ----------QM-----TPPSSPGSDLETGSEPEDL 189
                    :|.:.|....:...:....||          :|     |...:||:.  :|...||.
  Fly   359 --------VAQYSSEYEILTESEMEEKYQADADNAEIAIEMTRLLGTASGTPGAG--SGQVMEDS 413

  Fly   190 SVRNDIPLPALFHLFDEAKSSS--SGASVSSSSGYSYTPAMSASSASVAANHAKNYRFKCDECQK 252
            ...:....|:......:.||.|  ||.:.:...| |.|.|.|:.|.:.|:               
  Fly   414 GGGSATTGPSTTVSVTQVKSDSKASGTNAALKPG-SVTVARSSKSGATAS--------------- 462

  Fly   253 MYSTSMGLSKHRQFHCPAAECNQEKKTH------SCEECGKLYTTIGALKMHI---------RTH 302
                           .|.|..::|...:      :|..||:...::.||:.||         :.|
  Fly   463 ---------------APPAGSDEESVQYTGLAPLNCSFCGRPLKSVNALRRHIASRHSEIQGKEH 512

  Fly   303 TLPCKCPICGKAFSRPWLLQGH 324
                :|.||.|:|...|.|..|
  Fly   513 ----ECFICMKSFKTKWSLSTH 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 8/17 (47%)
zf-H2C2_2 321..344 CDD:290200 2/4 (50%)
zf-C2H2 334..356 CDD:278523
C2H2 Zn finger 336..356 CDD:275368
zf-H2C2_2 348..373 CDD:290200
C2H2 Zn finger 364..380 CDD:275368
C2H2 Zn finger 247..267 CDD:275368 0/19 (0%)
C2H2 Zn finger 282..302 CDD:275368 7/28 (25%)
zf-C2H2 306..328 CDD:278523 8/19 (42%)
COG5048 307..>356 CDD:227381 8/18 (44%)
CG12236NP_727050.1 BTB 22..116 CDD:279045
BTB 33..116 CDD:197585
Herpes_capsid <376..467 CDD:283714 23/123 (19%)
C2H2 Zn finger 483..512 CDD:275371 7/28 (25%)
C2H2 Zn finger 514..535 CDD:275371 8/17 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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