DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and Snai1

DIOPT Version :9

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_446257.1 Gene:Snai1 / 116490 RGDID:620758 Length:264 Species:Rattus norvegicus


Alignment Length:283 Identity:109/283 - (38%)
Similarity:141/283 - (49%) Gaps:75/283 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 PFQSAFVMAA-----GCNPISAL----WSS-----YQP-HLAAFP---SP-ASSMASPQSVYSYQ 168
            |:..|.::||     ..||.::|    |.|     .|| ..|..|   || |:.:.|.....|.:
  Rat    34 PYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVQPVAWATLPLRESPRAAELTSLSDEDSGK 98

  Fly   169 QMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASVSSSSGYSYTPAMSASSA 233
            ...|||.|.                  |.|:.|       ||:|.:|:.:.:..:: |.:.....
  Rat    99 SSQPPSPPS------------------PAPSSF-------SSTSASSLEAEAFIAF-PGLGQLPK 137

  Fly   234 SVAANHAKNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMH 298
            .:|                              ....|:..|.:|..:|:.|.|.|.::||||||
  Rat   138 QLA------------------------------RLSVAKDPQSRKAFNCKYCNKEYLSLGALKMH 172

  Fly   299 IRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYA 363
            ||:|||||.|..||||||||||||||:|||||||||.|..|.|:||||||||||.|||.|||:|.
  Rat   173 IRSHTLPCVCTTCGKAFSRPWLLQGHVRTHTGEKPFSCSHCNRAFADRSNLRAHLQTHSDVKRYQ 237

  Fly   364 CQVCHKSFSRMSLLNKHSSSNCT 386
            ||.|.::|||||||:||..|.|:
  Rat   238 CQACARTFSRMSLLHKHQESGCS 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 16/19 (84%)
zf-H2C2_2 321..344 CDD:290200 16/22 (73%)
zf-C2H2 334..356 CDD:278523 15/21 (71%)
C2H2 Zn finger 336..356 CDD:275368 14/19 (74%)
zf-H2C2_2 348..373 CDD:290200 16/24 (67%)
C2H2 Zn finger 364..380 CDD:275368 10/15 (67%)
C2H2 Zn finger 247..267 CDD:275368 0/19 (0%)
C2H2 Zn finger 282..302 CDD:275368 12/19 (63%)
zf-C2H2 306..328 CDD:278523 17/21 (81%)
COG5048 307..>356 CDD:227381 38/48 (79%)
Snai1NP_446257.1 C2H2 Zn finger 156..176 CDD:275368 12/19 (63%)
COG5048 <177..>253 CDD:227381 58/75 (77%)
zf-C2H2 180..202 CDD:278523 17/21 (81%)
C2H2 Zn finger 182..202 CDD:275368 16/19 (84%)
zf-H2C2_2 195..218 CDD:290200 16/22 (73%)
zf-C2H2 208..230 CDD:278523 15/21 (71%)
C2H2 Zn finger 210..230 CDD:275368 14/19 (74%)
C2H2 Zn finger 238..255 CDD:275368 11/16 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 219 1.000 Inparanoid score I3483
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.820

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