DRSC/TRiP Functional Genomics Resources

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Protein Alignment sna and Snai1

DIOPT Version :10

Sequence 1:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_446257.1 Gene:Snai1 / 116490 RGDID:620758 Length:264 Species:Rattus norvegicus


Alignment Length:283 Identity:109/283 - (38%)
Similarity:141/283 - (49%) Gaps:75/283 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 PFQSAFVMAA-----GCNPISAL----WSS-----YQP-HLAAFP---SP-ASSMASPQSVYSYQ 168
            |:..|.::||     ..||.::|    |.|     .|| ..|..|   || |:.:.|.....|.:
  Rat    34 PYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVQPVAWATLPLRESPRAAELTSLSDEDSGK 98

  Fly   169 QMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASVSSSSGYSYTPAMSASSA 233
            ...|||.|.                  |.|:.|       ||:|.:|:.:.:..:: |.:.....
  Rat    99 SSQPPSPPS------------------PAPSSF-------SSTSASSLEAEAFIAF-PGLGQLPK 137

  Fly   234 SVAANHAKNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMH 298
            .:|                              ....|:..|.:|..:|:.|.|.|.::||||||
  Rat   138 QLA------------------------------RLSVAKDPQSRKAFNCKYCNKEYLSLGALKMH 172

  Fly   299 IRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYA 363
            ||:|||||.|..||||||||||||||:|||||||||.|..|.|:||||||||||.|||.|||:|.
  Rat   173 IRSHTLPCVCTTCGKAFSRPWLLQGHVRTHTGEKPFSCSHCNRAFADRSNLRAHLQTHSDVKRYQ 237

  Fly   364 CQVCHKSFSRMSLLNKHSSSNCT 386
            ||.|.::|||||||:||..|.|:
  Rat   238 CQACARTFSRMSLLHKHQESGCS 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snaNP_476732.1 SFP1 <245..303 CDD:227516 15/57 (26%)
C2H2 Zn finger 247..267 CDD:275368 0/19 (0%)
C2H2 Zn finger 282..302 CDD:275368 12/19 (63%)
zf-C2H2 306..328 CDD:395048 17/21 (81%)
C2H2 Zn finger 308..328 CDD:275368 16/19 (84%)
zf-H2C2_2 321..344 CDD:463886 16/22 (73%)
zf-C2H2 334..356 CDD:395048 15/21 (71%)
C2H2 Zn finger 336..356 CDD:275368 14/19 (74%)
zf-H2C2_2 348..373 CDD:463886 16/24 (67%)
C2H2 Zn finger 364..380 CDD:275368 10/15 (67%)
Snai1NP_446257.1 C2H2 Zn finger 156..176 CDD:275368 12/19 (63%)
zf-C2H2 180..202 CDD:395048 17/21 (81%)
C2H2 Zn finger 182..202 CDD:275368 16/19 (84%)
zf-H2C2_2 195..218 CDD:463886 16/22 (73%)
zf-C2H2 208..230 CDD:395048 15/21 (71%)
C2H2 Zn finger 210..230 CDD:275368 14/19 (74%)
C2H2 Zn finger 238..255 CDD:275368 11/16 (69%)

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