DRSC/TRiP Functional Genomics Resources

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Protein Alignment wor and snai3

DIOPT Version :9

Sequence 1:NP_476601.1 Gene:wor / 34906 FlyBaseID:FBgn0001983 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001070853.1 Gene:snai3 / 567724 ZFINID:ZDB-GENE-061013-757 Length:283 Species:Danio rerio


Alignment Length:342 Identity:122/342 - (35%)
Similarity:162/342 - (47%) Gaps:115/342 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 NNNLLKSIAEYEDCMKMQNIKEEIPPIP------------SPQLFYPPPTPLAEPEDLSVTQRRV 215
            :|:.||::..:::..          |:|            |..::.||..|....:|        
Zfish    34 SNSKLKTLHPHQNMF----------PVPCYGNSAGWMNPISSDIYMPPQHPSLPIDD-------- 80

  Fly   216 LSENMNLQNVARALLSMQHMAPQHAPPPIDME---EDQENQDINQLKIKSSNDLYYQCQQCNKCY 277
                        .:|.:.:..|..:.|..||.   ...|:.|.:.|:: |..||:      .|..
Zfish    81 ------------PILGLTYPLPAPSSPLRDMRPALSMLEHTDPSSLQL-SHRDLH------EKVP 126

  Fly   278 ATYAGLVK--HQQTHAYESTEYKIIRSQPGGSGAIVDQTEFCTDQASALIQAANVASAQSMQKPV 340
            .:..||..  :.|.|:.|                                               
Zfish   127 VSPLGLTTTGNSQEHSDE----------------------------------------------- 144

  Fly   341 GVPRYHCQDCGKSYSTYSGLSKHQQFHC--PSAEGNQVKKVFSCKNCDKTYVSLGALKMHIRTHT 403
                  |.||.|:|.::|.|:..:|.||  |      ..|.|:||.|:|.|||||||||||||||
Zfish   145 ------CFDCQKAYLSFSNLANQRQVHCQWP------CHKYFTCKYCEKEYVSLGALKMHIRTHT 197

  Fly   404 LPCKCPICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFADRSNLRAHMQTHSDVKKYSCPTCT 468
            |||.|.:||||||||||||||||||||||||:|.||:||||||||||||:||||::|||.|..|.
Zfish   198 LPCVCKLCGKAFSRPWLLQGHIRTHTGEKPFTCPHCSRAFADRSNLRAHLQTHSEIKKYQCRNCF 262

  Fly   469 KSFSRMSLLAKHLQSGC 485
            |:|||:|||.||.::||
Zfish   263 KTFSRISLLTKHEEAGC 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
worNP_476601.1 C2H2 Zn finger 270..290 CDD:275368 4/21 (19%)
C2H2 Zn finger 317..334 CDD:275368 0/16 (0%)
zf-C2H2 345..367 CDD:278523 8/21 (38%)
C2H2 Zn finger 347..367 CDD:275368 8/19 (42%)
PHA00732 379..>417 CDD:177300 29/37 (78%)
C2H2 Zn finger 382..402 CDD:275368 16/19 (84%)
zf-C2H2_8 405..482 CDD:292531 60/76 (79%)
zf-C2H2 406..428 CDD:278523 18/21 (86%)
C2H2 Zn finger 408..428 CDD:275368 17/19 (89%)
zf-H2C2_2 421..444 CDD:290200 19/22 (86%)
zf-C2H2 434..456 CDD:278523 17/21 (81%)
C2H2 Zn finger 436..456 CDD:275368 16/19 (84%)
zf-H2C2_2 448..473 CDD:290200 16/24 (67%)
C2H2 Zn finger 464..481 CDD:275368 10/16 (63%)
snai3NP_001070853.1 C2H2 Zn finger 176..196 CDD:275368 16/19 (84%)
C2H2 Zn finger 202..222 CDD:275368 17/19 (89%)
zf-H2C2_2 215..238 CDD:290200 19/22 (86%)
zf-C2H2 228..250 CDD:278523 17/21 (81%)
C2H2 Zn finger 230..250 CDD:275368 16/19 (84%)
C2H2 Zn finger 258..274 CDD:275368 9/15 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 1.000 Domainoid score I12001
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 231 1.000 Inparanoid score I3419
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6484
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3546
SonicParanoid 1 1.000 - - X955
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
98.850

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